![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi0083s01090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 355aa MW: 39160.6 Da PI: 5.0117 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.1 | 4.6e-34 | 232 | 286 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+ Vradi0083s01090.1 232 KTRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVDGLTIYHVKSHLQKYRT 286 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.504 | 229 | 289 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.48E-18 | 230 | 286 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-32 | 230 | 288 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.1E-25 | 232 | 286 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.1E-10 | 234 | 285 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.4E-9 | 319 | 339 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 355 aa Download sequence Send to blast |
MATHDKTNPN GLKSDGPEPP CPHTFTWDSK AMSSSSRVLP TPLENKYMKP PDSCHLSPAS 60 DLAANSVSSN SITSAGKIIS SPSEYPDGTP FSFASQNDRQ NEDLPFVSQT LGDNVSSEIH 120 STTFISHPHE STDITWGPDP FQDILGFPEN ISAQHDQVVD NACYINDENV KRTDFGEWVD 180 QLMSIDDSLH PNWSQLLGDD NAAEPKPKVP QLLEIPSGEV NGNSAATTPQ TKTRMRWTPE 240 LHEAFVEAVN QLGGSEKATP KGVLNLMKVD GLTIYHVKSH LQKYRTARYK PEPSEGTSEK 300 KTTPIEEMKS LDLKTSKGIT EALRLQMDLQ KRLHEQLEVV NLSVVFGCSY FLRL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-32 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-32 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-32 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-32 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-32 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-32 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-32 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-32 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi0083s01090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491427.1 | 0.0 | protein PHR1-LIKE 1 | ||||
TrEMBL | A0A1S3TCD6 | 0.0 | A0A1S3TCD6_VIGRR; protein PHR1-LIKE 1 | ||||
STRING | XP_007147208.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1512 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G29000.2 | 2e-77 | G2-like family protein |