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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0023s00860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 117aa MW: 13137.3 Da PI: 10.1155 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.1 | 1.6e-09 | 9 | 90 | 7 | 90 |
FAR1 7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 A ++GF v++ +s + ++ ++ t + C ++gk ++ k++ +++++ +Ck+ +k++ + + w+++ + HnHela Vradi0023s00860.1 9 AFQLGFVVVIVRSDTAtDEPERKTFVVLGCERSGKYRKYKQD----VQPSVSGTRKCKCPFKLRGKPkGHGWVLKVMCGYHNHELA 90 7899*****99988872444445566667******9998777....8999999999999999999986788*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.9E-7 | 9 | 90 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MIDWVRKIAF QLGFVVVIVR SDTATDEPER KTFVVLGCER SGKYRKYKQD VQPSVSGTRK 60 CKCPFKLRGK PKGHGWVLKV MCGYHNHELA ETLVGHPYAG RLNAAEQSIL IDMTKS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0023s00860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-101 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. | |||
GenBank | AP015044 | 1e-101 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014521959.1 | 1e-83 | uncharacterized protein LOC106778497 | ||||
TrEMBL | A0A1S3VV74 | 3e-82 | A0A1S3VV74_VIGRR; uncharacterized protein LOC106778497 | ||||
STRING | XP_007139082.1 | 3e-40 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF180 | 11 | 22 |