PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0023s00860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 117aa    MW: 13137.3 Da    PI: 10.1155
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0023s00860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.11.6e-09990790
               FAR1  7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                       A ++GF v++ +s +  ++ ++ t   + C ++gk ++ k++     +++++   +Ck+ +k++ +   + w+++ +   HnHela
  Vradi0023s00860.1  9 AFQLGFVVVIVRSDTAtDEPERKTFVVLGCERSGKYRKYKQD----VQPSVSGTRKCKCPFKLRGKPkGHGWVLKVMCGYHNHELA 90
                       7899*****99988872444445566667******9998777....8999999999999999999986788*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-7990IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MIDWVRKIAF QLGFVVVIVR SDTATDEPER KTFVVLGCER SGKYRKYKQD VQPSVSGTRK  60
CKCPFKLRGK PKGHGWVLKV MCGYHNHELA ETLVGHPYAG RLNAAEQSIL IDMTKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0023s00860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-101AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
GenBankAP0150441e-101AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521959.11e-83uncharacterized protein LOC106778497
TrEMBLA0A1S3VV743e-82A0A1S3VV74_VIGRR; uncharacterized protein LOC106778497
STRINGXP_007139082.13e-40(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1801122