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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0023s00720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 213aa MW: 24224.2 Da PI: 10.5404 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 52.1 | 1.8e-16 | 28 | 118 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Liea e++ +l+rg+l++ +W+ev++ + + +r+ +qCk++++ l+k+yk +k++ ++ +s + +p+f++le Vradi0023s00720.1 28 CWSEEATFTLIEAWGERHLELNRGNLRQRHWQEVADTVnarhgnAGARARRTDVQCKNRIDTLKKKYKIEKARVSDS-GDSATAWPFFRRLE 118 7*************************************9988766667799*********************99985.677779*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.1E-26 | 26 | 119 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MDSIAGAPPH TANHPSSRPS PFPGREDCWS EEATFTLIEA WGERHLELNR GNLRQRHWQE 60 VADTVNARHG NAGARARRTD VQCKNRIDTL KKKYKIEKAR VSDSGDSATA WPFFRRLEFL 120 IGDNFPAKKP SPPESGSADR RSTPPAKSPA WAPIPTYERV EEAKQRQMVE LEKQRMQFAK 180 DLETQRMKLF METQLHLQKM NRSNSKRSSA TG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0023s00720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014522016.1 | 1e-113 | trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 5e-36 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A1S3VUF4 | 1e-112 | A0A1S3VUF4_VIGRR; trihelix transcription factor ASIL2 | ||||
STRING | XP_007149737.1 | 8e-97 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1887 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 5e-41 | sequence-specific DNA binding transcription factors |