PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0023s00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 331aa    MW: 37477.4 Da    PI: 6.38
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0023s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.72e-3188141255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWtp+LH +Fv+av++LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+
  Vradi0023s00060.1  88 PRLRWTPDLHLAFVHAVDRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 141
                        8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.53384144IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2984142IPR009057Homeodomain-like
SuperFamilySSF466892.87E-1486142IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-2288143IPR006447Myb domain, plants
PfamPF002491.7E-889140IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDERICISEE EKSESSRPSS ASLIRRKRSF FDLNEEAVDD GDGSTSDDPI SNNEISSQEG  60
NLSSNNNSSD EGKERGTAVR QYVRSKMPRL RWTPDLHLAF VHAVDRLGGQ ERATPKLVLQ  120
LMNVRGLSIA HVKSHLQMYR SKKLDESGQV LSQNRAMQGR HSIFDMYGRL NAPRHFVVDN  180
RNYVPSSLLM EQSPYQISAH SSRLHPTGFL NNHHMMIRSS SVWDKDLCNY QYQRSSCSPN  240
FTGHAKFDAE VGDVKNGMAE FLNEVQERKQ GEMKGEYEKS FLEVNLSKDD AESEEEINTR  300
LSLSLFTSSS SNDKDDSHVE SFCLQRSRLG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-1989143357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1989143357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1989143357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1989143357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0023s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-174AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521965.10.0two-component response regulator ARR18 isoform X2
TrEMBLA0A1S3VUI40.0A0A1S3VUI4_VIGRR; two-component response regulator ARR18 isoform X2
STRINGXP_007149732.11e-172(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30123270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-39G2-like family protein