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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0023s00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 331aa MW: 37477.4 Da PI: 6.38 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.7 | 2e-31 | 88 | 141 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+av++LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Vradi0023s00060.1 88 PRLRWTPDLHLAFVHAVDRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 141 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.533 | 84 | 144 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-29 | 84 | 142 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-14 | 86 | 142 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-22 | 88 | 143 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-8 | 89 | 140 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MDERICISEE EKSESSRPSS ASLIRRKRSF FDLNEEAVDD GDGSTSDDPI SNNEISSQEG 60 NLSSNNNSSD EGKERGTAVR QYVRSKMPRL RWTPDLHLAF VHAVDRLGGQ ERATPKLVLQ 120 LMNVRGLSIA HVKSHLQMYR SKKLDESGQV LSQNRAMQGR HSIFDMYGRL NAPRHFVVDN 180 RNYVPSSLLM EQSPYQISAH SSRLHPTGFL NNHHMMIRSS SVWDKDLCNY QYQRSSCSPN 240 FTGHAKFDAE VGDVKNGMAE FLNEVQERKQ GEMKGEYEKS FLEVNLSKDD AESEEEINTR 300 LSLSLFTSSS SNDKDDSHVE SFCLQRSRLG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-19 | 89 | 143 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-19 | 89 | 143 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-19 | 89 | 143 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-19 | 89 | 143 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0023s00060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-174 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014521965.1 | 0.0 | two-component response regulator ARR18 isoform X2 | ||||
TrEMBL | A0A1S3VUI4 | 0.0 | A0A1S3VUI4_VIGRR; two-component response regulator ARR18 isoform X2 | ||||
STRING | XP_007149732.1 | 1e-172 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3012 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-39 | G2-like family protein |