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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0007s02580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WOX | ||||||||
Protein Properties | Length: 200aa MW: 22283.8 Da PI: 8.4367 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 18.4 | 3.6e-06 | 23 | 59 | 2 | 37 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl 37 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l Vradi0007s02580.1 23 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLL 59 89*****************989999999988887665 PP | |||||||
2 | Wus_type_Homeobox | 67.5 | 2.5e-22 | 22 | 70 | 2 | 50 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNV 50 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NV Vradi0007s02580.1 22 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANV 70 589*********************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MEDERQKEAK SPRHGSEKSE AVRSRWTPKP EQILILESIF NSGMVNPPKD ETVRIRKLLE 60 KFGAVGDANV LILITVVLFC GVGYGGTNIS AFITVFINGI ATELPKGPID MKTVFGEDVM 120 LVHSSGIPIL PNDFGFLMQN LQHGESYYLV RRIFKSIASF PNLVLYQSQY KYESISHSSN 180 RSFLLEFIRL ALAAPLVSF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269|PubMed:26307379, ECO:0000269|PubMed:29740464}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250|UniProtKB:Q0D3I7}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0007s02580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-130 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006658976.1 | 2e-42 | PREDICTED: WUSCHEL-related homeobox 11 | ||||
Refseq | XP_014491062.1 | 6e-42 | WUSCHEL-related homeobox 11 | ||||
Swissprot | B8B644 | 1e-27 | WOX11_ORYSI; WUSCHEL-related homeobox 11 | ||||
Swissprot | Q0D3I7 | 1e-27 | WOX11_ORYSJ; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A3Q7H2E0 | 2e-50 | A0A3Q7H2E0_SOLLC; Uncharacterized protein | ||||
STRING | XP_007161896.1 | 7e-40 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5898 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 2e-29 | WUSCHEL related homeobox 11 |
Publications ? help Back to Top | |||
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