PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0007s02580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 200aa    MW: 22283.8 Da    PI: 8.4367
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0007s02580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.43.6e-062359237
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC CS
           Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl 37
                       r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l
  Vradi0007s02580.1 23 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLL 59
                       89*****************989999999988887665 PP

2Wus_type_Homeobox67.52.5e-222270250
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNV 50
                       +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NV
  Vradi0007s02580.1 22 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANV 70
                       589*********************************************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEDERQKEAK SPRHGSEKSE AVRSRWTPKP EQILILESIF NSGMVNPPKD ETVRIRKLLE  60
KFGAVGDANV LILITVVLFC GVGYGGTNIS AFITVFINGI ATELPKGPID MKTVFGEDVM  120
LVHSSGIPIL PNDFGFLMQN LQHGESYYLV RRIFKSIASF PNLVLYQSQY KYESISHSSN  180
RSFLLEFIRL ALAAPLVSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269|PubMed:26307379, ECO:0000269|PubMed:29740464}.
UniProtTranscription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250|UniProtKB:Q0D3I7}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0007s02580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-130AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658976.12e-42PREDICTED: WUSCHEL-related homeobox 11
RefseqXP_014491062.16e-42WUSCHEL-related homeobox 11
SwissprotB8B6441e-27WOX11_ORYSI; WUSCHEL-related homeobox 11
SwissprotQ0D3I71e-27WOX11_ORYSJ; WUSCHEL-related homeobox 11
TrEMBLA0A3Q7H2E02e-50A0A3Q7H2E0_SOLLC; Uncharacterized protein
STRINGXP_007161896.17e-40(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.12e-29WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhao Y, et al.
    The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
    Plant Cell, 2015. 27(9): p. 2469-83
    [PMID:26307379]
  3. Zhang T, et al.
    The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.
    Front Plant Sci, 2018. 9: p. 523
    [PMID:29740464]