PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0007s01250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 256aa    MW: 28284 Da    PI: 7.6767
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0007s01250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.5e-17186220135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        Cs+C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Vradi0007s01250.1 186 CSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 220
                        *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-14180234IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.451180216IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-14182244No hitNo description
Gene3DG3DSA:3.30.50.101.1E-13184218IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.48E-11185232No hitNo description
PfamPF003202.9E-15186220IPR000679Zinc finger, GATA-type
PROSITE patternPS003440186211IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MNMCQTQCHQ DQVFASSCST SLDDLFSAKN TEVDVELEWL SEFVEDCFSS PPSFVLGGGG  60
AKNSTTSISI STSTGSSSSN TLKRAAQENE CPLQNFAVPG KARSKRKRLS APRTKDPLSV  120
WSHHLNPENE ALSSDPPLLK QAYWLADSEL MMMPKPKEEE EEVRKMVIGE CEVEGSSGQQ  180
AMARRCSHCL AQRTPQWRAG PLGPKTLCNA CGVRYKSGRL LPEYRPAKSP TFVSYLHSNS  240
HKKVMEMRMS VYSDH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0007s01250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491159.10.0GATA transcription factor 9
TrEMBLA0A1S3TBL70.0A0A1S3TBL7_VIGRR; GATA transcription factor 9
STRINGXP_007161927.11e-146(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-39GATA transcription factor 9