![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi0007s01250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 256aa MW: 28284 Da PI: 7.6767 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.5 | 1.5e-17 | 186 | 220 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + Tp+WR gp g+ktLCnaCG++y++ +l Vradi0007s01250.1 186 CSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 220 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.1E-14 | 180 | 234 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.451 | 180 | 216 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.24E-14 | 182 | 244 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-13 | 184 | 218 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.48E-11 | 185 | 232 | No hit | No description |
Pfam | PF00320 | 2.9E-15 | 186 | 220 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 186 | 211 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MNMCQTQCHQ DQVFASSCST SLDDLFSAKN TEVDVELEWL SEFVEDCFSS PPSFVLGGGG 60 AKNSTTSISI STSTGSSSSN TLKRAAQENE CPLQNFAVPG KARSKRKRLS APRTKDPLSV 120 WSHHLNPENE ALSSDPPLLK QAYWLADSEL MMMPKPKEEE EEVRKMVIGE CEVEGSSGQQ 180 AMARRCSHCL AQRTPQWRAG PLGPKTLCNA CGVRYKSGRL LPEYRPAKSP TFVSYLHSNS 240 HKKVMEMRMS VYSDH* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi0007s01250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491159.1 | 0.0 | GATA transcription factor 9 | ||||
TrEMBL | A0A1S3TBL7 | 0.0 | A0A1S3TBL7_VIGRR; GATA transcription factor 9 | ||||
STRING | XP_007161927.1 | 1e-146 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8487 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32890.1 | 1e-39 | GATA transcription factor 9 |