PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g15260.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 712aa    MW: 80705.5 Da    PI: 9.9378
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g15260.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.19.5e-11495539953
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     ++ +e L ++F+ n  p ++ re+L+k+lgL++++V+ WF+N R+
  Vang11g15260.2 495 RDSVEKLRQVFAVNELPPRSIREDLSKELGLDTEKVSKWFKNARY 539
                     678999*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.855484544IPR001356Homeobox domain
SMARTSM003893.6E-9486548IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-10486538IPR009057Homeodomain-like
SuperFamilySSF466895.99E-10487550IPR009057Homeodomain-like
CDDcd000867.02E-8492548No hitNo description
PfamPF000463.0E-8495539IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
LFLLLQTLVG LDIWIQSQGL EARGVLAVLS TWGISVKKSN DKGSKKSGHL KARTKGKKDK  60
VKVESKSHTK NVGTDVSKKR VISSLKIKGP RKDSSDKKLT TGQKLPLKNR KSSQKPSSKL  120
PGKKASLSSR KEGKDADGEV KLQKMKRKRT KKRQRNNLDL DDPSRLQRRA RYLLIKMKLE  180
QNLIDAYSGE GWKGQSREKI RPEKELQRAR KQILKCRLGI RDAIRQLDSL GSLSCIEDSA  240
IAPGGSGCQE HVSKYQHFIA LNDSLFFPFN TFPPGGQDWF CNFCECKMEI LEAMNAHLGT  300
HFSLHSAWQD VFKEEAAIPD GETTLLNPEE EWPSDDSEDD DYDPERKEDS HNINMEGTND  360
SASDDLSSST SLCYSDDEHS PVHGVSHEYL FANTSIDSDE SEDKACGRRQ RKAVDYKKLY  420
DEMFGKEAPA YEQLSEDEDW GPGKRKRREK ECDAVDSLMT LHESENMHPN NEHNNMTKII  480
SSGTNIRRHC FRIPRDSVEK LRQVFAVNEL PPRSIREDLS KELGLDTEKV SKWFKNARYL  540
ALKSRKHQAE GAANQHKGIT STKNSILQNQ EKTDLLKPKT LKITTSHSQK DVKNVSGRKK  600
IKFSSKKRQP EIPPPPGENG NKDSMEMSDD VSLKKLLKKK KKRLVNFTFA GDSQTAELEF  660
ERLCKLKQKL ISMKQKLTRI QRLDAKGSDE AHCNEASIVY VPTAVLREKT E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144151MKRKRTKK
2444449RKRREK
3636643LKKKKKRL
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g15260.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017409606.10.0PREDICTED: pathogenesis-related homeodomain protein-like
SwissprotP487851e-108PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0L9TFS60.0A0A0L9TFS6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R7Y90.0A0A0S3R7Y9_PHAAN; Uncharacterized protein
STRINGXP_007154716.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-104pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]