PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang1010s00010.2
Common NameLR48_Vigan07g034000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 549aa    MW: 62235.1 Da    PI: 7.169
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang1010s00010.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-184297257
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      +kR   t++ql +Le+++ +++yp++e++ eLA+kl+Lte+q++ WF+ rR k+k+
  Vang1010s00010.2 42 KKRKLKTQSQLSALETFYDEHKYPTEEMKVELAEKLRLTEKQISGWFCHRRLKDKR 97
                      89****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-202597IPR009057Homeodomain-like
PROSITE profilePS5007117.1033898IPR001356Homeobox domain
SuperFamilySSF466892.99E-1740105IPR009057Homeodomain-like
SMARTSM003898.8E-1940102IPR001356Homeobox domain
PfamPF000464.2E-164297IPR001356Homeobox domain
CDDcd000864.08E-164297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MKDYSNFHAF EIDCWHRELG SFALESSKLQ SEENKVSNEK NKKRKLKTQS QLSALETFYD  60
EHKYPTEEMK VELAEKLRLT EKQISGWFCH RRLKDKRLMK DEAVANGRQD RSSGVIQDRG  120
SGLGQDSCGS SKHADYRYLD AKEVESHDFY NNEISVADMT HRRMNHYPEN VSVVDDTSSE  180
SSSFLQERAF AQGQDPYDME PSRHLTPNGA LPPLNPKGAV NLGYKPSGYL KVKGEIEHAA  240
ITAVKKQLGR HYEEDGPLLG IEFDLLPPGA FECQTEDPAN EPFCVANPPL LNSPEISAAK  300
KHNLSSRYDS HYTKFNSQDL HMERADFGSL HESDFQDKQD KKARQNIKQR QPYYGYTNHV  360
SGRNPFPDLY EDSTGEASGY NSAKNHRMST KHGVEGMRSD SASNHSDHFE EKLAVKTKDL  420
VLHGYDKINP KRIQKSGHVK SKPSSSIRNS RVPIDTEERG LSARMAKEEM FKVDKKAKNT  480
YRDVDGAGRL SNEILVAKRA KVDMLQQYHV KPSPVAEMEK RKIHRSAAEM PSSFSEDETA  540
ETSSSLDY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang1010s00010.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428991.10.0PREDICTED: uncharacterized protein LOC108337065 isoform X1
TrEMBLA0A0L9UV770.0A0A0L9UV77_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RJT50.0A0A0S3RJT5_PHAAN; Uncharacterized protein
STRINGGLYMA14G03850.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.15e-75HB-other family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]