PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g08410.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Nin-like

Protein Properties

Length: 839aa MW: 93073.3 Da PI: 6.1718

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g08410.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1e-28	582	632	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Vang06g08410.1 582 EKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 632 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	571	652	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-25	585	632	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 839 aa Download sequence Send to blast
MSESEEENTD CVPRSKPAEE VGCTMDFDLD LETSWPLDHM SFGSNPMSPF LFSSNSDQPY 60 SPLWAFSDGE DAKFPASAFS DCHKIFPCDS NSIAEKPEEN DDNKKLLPPL APMTPLENVG 120 GYCVIKERMT QALRYFKELT ELNVLAQVWA PVRNGNRYVL TTSGQPFVLD PHSNGLHQYR 180 TVSLMYMFAV DGENDGSLGL PGRVFQQKLP EWTPNVLYYS SKEYPRRDHA QHYNVRGSLA 240 LPVFEPALQS CVGVLELIMT SQKINYAPEV DKICKALETV NLRSSEILDH PYTQICNEGR 300 QNALSEILEI LTVVCETHNL PLAQTWIPCK HRSVLAQGGG VKKICSSFDG SCMGKVCMST 360 TDVAFYIIDA HLWGFREACV EHHLQQSQGV AGRAFLSHSM CFCSSITQFC KTDYPLVHYA 420 LMFGLTSCFA ICLRSSHTGT DDYVLEFFLP PRVTDFHEQK TLLASILATM KQHFQSLKIA 480 SGVELEDGSI EIIEATIERI HTRHESIPIA PSIRSPPRPD TSPNMEEEVS LDPSEQHILM 540 YCNGTNHGAN LSDKAGGKID HMITLETKTS KKPLERKRGK TEKSISLEVL QRYFAGSLKD 600 AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK RVIESVQGAE GAFGLNSLST 660 SPLPIAVGSL PEPSTRNKFS QPVSMSIRPS EPQMKVNELN ASKELETNRE AGMEDQLVGG 720 RIHNLERVTN DKGGSTQEIG KEPKRTRTGS GSSEDSTNPT SHGSWHDSIP NESSPVKDIF 780 ITSNHDQCAV LRRSPESTLQ PATNTPNQAT PFCMPEFVAA ELQEPFGGML IEDADKRS*

Sequence ? help Back to Top

Protein Sequence Length: 839 aa Download sequence Send to blast

MSESEEENTD CVPRSKPAEE VGCTMDFDLD LETSWPLDHM SFGSNPMSPF LFSSNSDQPY  60
SPLWAFSDGE DAKFPASAFS DCHKIFPCDS NSIAEKPEEN DDNKKLLPPL APMTPLENVG  120
GYCVIKERMT QALRYFKELT ELNVLAQVWA PVRNGNRYVL TTSGQPFVLD PHSNGLHQYR  180
TVSLMYMFAV DGENDGSLGL PGRVFQQKLP EWTPNVLYYS SKEYPRRDHA QHYNVRGSLA  240
LPVFEPALQS CVGVLELIMT SQKINYAPEV DKICKALETV NLRSSEILDH PYTQICNEGR  300
QNALSEILEI LTVVCETHNL PLAQTWIPCK HRSVLAQGGG VKKICSSFDG SCMGKVCMST  360
TDVAFYIIDA HLWGFREACV EHHLQQSQGV AGRAFLSHSM CFCSSITQFC KTDYPLVHYA  420
LMFGLTSCFA ICLRSSHTGT DDYVLEFFLP PRVTDFHEQK TLLASILATM KQHFQSLKIA  480
SGVELEDGSI EIIEATIERI HTRHESIPIA PSIRSPPRPD TSPNMEEEVS LDPSEQHILM  540
YCNGTNHGAN LSDKAGGKID HMITLETKTS KKPLERKRGK TEKSISLEVL QRYFAGSLKD  600
AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK RVIESVQGAE GAFGLNSLST  660
SPLPIAVGSL PEPSTRNKFS QPVSMSIRPS EPQMKVNELN ASKELETNRE AGMEDQLVGG  720
RIHNLERVTN DKGGSTQEIG KEPKRTRTGS GSSEDSTNPT SHGSWHDSIP NESSPVKDIF  780
ITSNHDQCAV LRRSPESTLQ PATNTPNQAT PFCMPEFVAA ELQEPFGGML IEDADKRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g08410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017415057.1	0.0	PREDICTED: protein NLP6-like isoform X1
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	A0A0S3SN48	0.0	A0A0S3SN48_PHAAN; Uncharacterized protein
STRING	XP_007143431.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]