PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g16060.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HB-other

Protein Properties

Length: 1067aa MW: 118694 Da PI: 9.2273

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g16060.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.2	8.8e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + +s++e +e+++ g+t +qV+ +F +R + ++ Vang04g16060.1 69 KRPRDLLNPKAVNYMQSIFSIKDSISKKELREISALFGVTATQVRDFFTGQRSRVRR 125 799**************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-5	65	120	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.766	66	126	IPR001356	Homeobox domain
SMART	SM00389	3.9E-4	68	130	IPR001356	Homeobox domain
CDD	cd00086	1.71E-4	69	125	No hit	No description
SuperFamily	SSF46689	3.25E-6	69	130	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	3.2E-5	226	310	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	5.23E-5	230	309	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1067 aa Download sequence Send to blast
MDAWNEDFAE QEIGNSAESF QKFLLSQRDL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV NYMQSIFSIK DSISKKELRE ISALFGVTAT QVRDFFTGQR 120 SRVRRLVQLS KERALGSNSC EDPHDDKIIP DPVRLINPAS VNSTVPSNAE EASCSTQDAA 180 LPDLDDSDKH FVDNIFSLMQ QEETFSGQER LMEWILTIQN FSVLLWFLSR GGGITLATWL 240 SKATAEEQTS VLLLILKVLC HLPLHKAIPM HISAILQSVN KLRFYRTSDI SNRARILLSK 300 WSKLLARNQV IKKPNGVRPS SDGHKELICQ RQACILFSMN NLFRHSFSII MVSTFCSIGQ 360 FVGSESWHSN IDVPEDFLSL SSESLDNFRK VGSPQAAKLL PPSLDDSNKK STLGVISSRI 420 LVFAISLFYS LTPLTESRER RKVQLVEQPG QKSVSRSSQV TRAGSVSQGR PMSADDIQKA 480 KMRALFMQSK YGKSSSKESK ETKIDSLNKQ PQTIPASIAA CSSKVPTPPK IDENKKPLLL 540 ASKTSNRLEA YSKPKVDVKE PLWEKCTRIQ IPWKTPAEVE LKDSWSVGGG ENSKEVDVQR 600 NRDRREKETI YKTIQEIPPN PKEPWDLEMD YDDTLTLEIP IEQLPDGDGA DITVSPNQVA 660 EHTVQGVAST SSTSVAPAEP DLELLAVLLK NPELVFALTS GQAGSIPGED VVKLLDMIKR 720 GGANLGLSEN TNGSYGTSVK APDKVEVSLP SPTPLSDPRT NGWSSEASKN PFSRRSVASD 780 RIIQNHAAVT TTNLLTQIPM TSTTALRQQP AVVVSSSRHL SSTTVSPYSL HQATNVNPEK 840 QQPLGHVQIP SSNVGLTMKK NLITTNAPSV NYSGTHSAVA MRGNGTNYVK PVHSMSVQHE 900 GVSNSFPQSS FKLPSPTPSN SASQQQRHQQ HIVQEAHYTE PPYRNPSRSY PPQTEKSDHG 960 SESAWRIRQD VPFSSQRNPN NYNTMVGGSR QSGFWDRNNQ GGEDFESWSP ENSPTRNPRY 1020 MPGRNYPDSR VNHGRNHRPE WSRQRGSSEH WDPDRQGNRK WHDQRR*

Sequence ? help Back to Top

Protein Sequence Length: 1067 aa Download sequence Send to blast

MDAWNEDFAE QEIGNSAESF QKFLLSQRDL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA  60
GALSIKIGKR PRDLLNPKAV NYMQSIFSIK DSISKKELRE ISALFGVTAT QVRDFFTGQR  120
SRVRRLVQLS KERALGSNSC EDPHDDKIIP DPVRLINPAS VNSTVPSNAE EASCSTQDAA  180
LPDLDDSDKH FVDNIFSLMQ QEETFSGQER LMEWILTIQN FSVLLWFLSR GGGITLATWL  240
SKATAEEQTS VLLLILKVLC HLPLHKAIPM HISAILQSVN KLRFYRTSDI SNRARILLSK  300
WSKLLARNQV IKKPNGVRPS SDGHKELICQ RQACILFSMN NLFRHSFSII MVSTFCSIGQ  360
FVGSESWHSN IDVPEDFLSL SSESLDNFRK VGSPQAAKLL PPSLDDSNKK STLGVISSRI  420
LVFAISLFYS LTPLTESRER RKVQLVEQPG QKSVSRSSQV TRAGSVSQGR PMSADDIQKA  480
KMRALFMQSK YGKSSSKESK ETKIDSLNKQ PQTIPASIAA CSSKVPTPPK IDENKKPLLL  540
ASKTSNRLEA YSKPKVDVKE PLWEKCTRIQ IPWKTPAEVE LKDSWSVGGG ENSKEVDVQR  600
NRDRREKETI YKTIQEIPPN PKEPWDLEMD YDDTLTLEIP IEQLPDGDGA DITVSPNQVA  660
EHTVQGVAST SSTSVAPAEP DLELLAVLLK NPELVFALTS GQAGSIPGED VVKLLDMIKR  720
GGANLGLSEN TNGSYGTSVK APDKVEVSLP SPTPLSDPRT NGWSSEASKN PFSRRSVASD  780
RIIQNHAAVT TTNLLTQIPM TSTTALRQQP AVVVSSSRHL SSTTVSPYSL HQATNVNPEK  840
QQPLGHVQIP SSNVGLTMKK NLITTNAPSV NYSGTHSAVA MRGNGTNYVK PVHSMSVQHE  900
GVSNSFPQSS FKLPSPTPSN SASQQQRHQQ HIVQEAHYTE PPYRNPSRSY PPQTEKSDHG  960
SESAWRIRQD VPFSSQRNPN NYNTMVGGSR QSGFWDRNNQ GGEDFESWSP ENSPTRNPRY  1020
MPGRNYPDSR VNHGRNHRPE WSRQRGSSEH WDPDRQGNRK WHDQRR*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g16060.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017418614.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-153	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0S3S0N0	0.0	A0A0S3S0N0_PHAAN; Uncharacterized protein
STRING	XP_007163082.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-129	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]