PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g07530.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 370aa    MW: 41428.1 Da    PI: 6.3555
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g07530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.33.9e-061676755
                    --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    f+++++ e+e   ++  n  p +e  + LA+k            ++ +qV +WFqN+R+  
  Vang02g07530.1 16 FNPTEVGEMEVILHEheNAMPAREILTALAEKFsesperkgkiTVQMKQVWNWFQNKRYAI 76
                    56666666666665434888999999999999999999999889999***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-9678IPR009057Homeodomain-like
SMARTSM003890.0055983IPR001356Homeobox domain
PROSITE profilePS500718.9891579IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-61583IPR009057Homeodomain-like
PfamPF167192.0E-40133259IPR032001SAWADEE domain
CDDcd000240.00807146179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
LIMGRPPSNG GPAFRFNPTE VGEMEVILHE HENAMPAREI LTALAEKFSE SPERKGKITV  60
QMKQVWNWFQ NKRYAIRAKS SKTPGKLNIT PMPRDDATPV RTMPQQPTAA PIPTASVTAV  120
LPAVKATPEN PVMEFEAKSG RDGAWYDVAT FLSHRYLETH DPEVLVRFAG FGPEEDEWIN  180
IRRHVRPRSL PCESSECVVV IPGDLILCFQ EGKEQALYFD AHVLDAQRRR HDVRGCRCRF  240
LVRYDHDQSE EIVPLRKICR RPETDYRLQQ LHAVVNEVAS VDQQKTGMDP SVPKQLIAAS  300
IHMETPVVQT NVPQTPQGMD MDVDQKKAET NIDVPSVNST TTPGNAPFTS VITTSSVPQV  360
TTQTQDMVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-451332634134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-451332634134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-451332634134SHH1 SAWADEE
4iur_B2e-451332634134SHH1 SAWADEE
4iut_A2e-451332634134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-451332634134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-451332634134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-451332634134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-451332634134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-451332634134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g07530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433263.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-143SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0S3S9I50.0A0A0S3S9I5_PHAAN; Uncharacterized protein
STRINGGLYMA06G35561.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-130sequence-specific DNA binding transcription factors;sequence-specific DNA binding