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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0070s00500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | YABBY | ||||||||
Protein Properties | Length: 158aa MW: 17503.9 Da PI: 9.6235 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 145.1 | 7.5e-45 | 15 | 158 | 2 | 159 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 d++ se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l ++ + + + + +h +l ++ + sn +k +++s+ Vang0070s00500.1 15 DLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNQSIDH-----------TLS-LQQGFYSNAKKGQASSS 95 78899*************************************9866555544444444443...........222.23334444333333322 PP YABBY 95 svsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 s s +++++ +p++ v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaakn Vang0070s00500.1 96 SSSP---TTSNESVSPKAASfVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKN 158 2222...244455666666669*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.3E-52 | 19 | 158 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.14E-7 | 106 | 156 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010254 | Biological Process | nectary development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0048479 | Biological Process | style development |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
LFLRNMNHDD KLTMDLVPPS EHLCYVRCNF CNTVLAVGIP CKRLLDTVTV KCGHCSNLSF 60 LSTRPPNSQN QSIDHTLSLQ QGFYSNAKKG QASSSSSSPT TSNESVSPKA ASFVVKPPEK 120 KHRLPSAYNR FMKEEIQRIK AANPEIPHRE AFSAAAKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00220 | DAP | Transfer from AT1G69180 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0070s00500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR011924 | 1e-153 | KR011924.1 Thermopsis turcica CRABS CLAW mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029127040.1 | 1e-111 | protein CRABS CLAW isoform X1 | ||||
Swissprot | Q76EJ0 | 3e-64 | YABDL_ORYSJ; Protein DROOPING LEAF | ||||
TrEMBL | A0A0S3T272 | 2e-99 | A0A0S3T272_PHAAN; Uncharacterized protein | ||||
TrEMBL | V7C981 | 2e-99 | V7C981_PHAVU; Uncharacterized protein | ||||
STRING | XP_007153487.1 | 1e-100 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10259 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 5e-57 | YABBY family protein |