PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0063ss00820.1
Common NameLR48_Vigan09g066900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 189aa    MW: 21468.6 Da    PI: 8.4992
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0063ss00820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.3e-204094256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       rk+ ++tkeq + Lee F++n++++ +++e LA++l+L  rqV vWFqNrRa+ k
  Vang0063ss00820.1 40 RKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSK 94
                       78889************************************************98 PP
2HD-ZIP_I/II119.12.4e-3840128189
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                        +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  Vang0063ss00820.1  40 RKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 128
                        69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-192294IPR009057Homeodomain-like
SuperFamilySSF466891.13E-192597IPR009057Homeodomain-like
PROSITE profilePS5007117.6373696IPR001356Homeobox domain
SMARTSM003897.6E-1838100IPR001356Homeobox domain
CDDcd000861.65E-163997No hitNo description
PfamPF000464.2E-174094IPR001356Homeobox domain
PROSITE patternPS0002707194IPR017970Homeobox, conserved site
PfamPF021835.4E-1096130IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.4E-2296139IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAAFGIAVKE LDINQVPVEE DWMASNMEDE EESSNGDPPR KKLRLTKEQS RLLEESFRQN  60
HTLNPKQKES LAMQLKLRPR QVEVWFQNRR ARSKLKQTEM ECEYLKRWFG SLTEQNRRLQ  120
REVEELRAMK VGPPTVISPH SCEPLPASTL TMCPRCERVT TTADKLPSAA ATLSAKVPPH  180
SPQPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0063ss00820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-164AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435839.11e-131PREDICTED: homeobox-leucine zipper protein HOX3
SwissprotQ0JKX17e-77HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH387e-77HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A0L9VAC11e-134A0A0L9VAC1_PHAAN; Uncharacterized protein
STRINGXP_007157736.11e-122(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.15e-73homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]