PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678474752
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family TCP
Protein Properties Length: 198aa    MW: 22352.8 Da    PI: 10.8179
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678474752genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP144.86.4e-45521932136
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnsssgka 90 
                agkkdrhski+T++g RdRR+Rls++ a++fFdLqd+LG+dk+sktieWL+ ++k+aikel +            +++s+s++++ ++++s+ +    ++
  678474752  52 AGKKDRHSKICTAQGIRDRRMRLSLQAARKFFDLQDMLGYDKASKTIEWLFSKSKKAIKELSKGqprvdsnvsnsQAKSESFVSDCDEVVSGVE----ES 147
                89************************************************************99665554444222222222233344444332....33 PP

        TCP  91 aksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136
                ++++  +  k++++ + +    +esr kararar rt+ekm+i+ ++
  678474752 148 SNKDVkCVMKEETNLE-KMPNVRESRDKARARARCRTKEKMMIRLSS 193
                3344424444444444.4455568******************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.8E-4253188IPR005333Transcription factor, TCP
PROSITE profilePS5136936.12254112IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.882169186IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MIPGSSSIAV DSGEKGHVEI KAKGKLMDPR VGKKMDPPLR RRNIGVAPRR RAGKKDRHSK  60
ICTAQGIRDR RMRLSLQAAR KFFDLQDMLG YDKASKTIEW LFSKSKKAIK ELSKGQPRVD  120
SNVSNSQAKS ESFVSDCDEV VSGVEESSNK DVKCVMKEET NLEKMPNVRE SRDKARARAR  180
CRTKEKMMIR LSSQLPES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1259112154Putative transcription factor PCF6
5zkt_B2e-1259112154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678474752
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071262.28e-57transcription factor TCP12
TrEMBLS8DNE32e-61S8DNE3_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc04g006980.1.15e-51(Solanum lycopersicum)
STRINGMigut.E00294.1.p5e-51(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-32TCP domain protein 12