PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678458546
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 352aa    MW: 39444 Da    PI: 8.9596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678458546genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-1887137256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ + +WvAeIr p++   r r++lg+++tae Aa a+++a+ kl+ge
  678458546  87 VYRGVRQRH-WRKWVAEIRLPRN---RVRVWLGTYDTAEAAAYAYDRAAYKLRGE 137
                7*******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.62E-2287145IPR016177DNA-binding domain
SMARTSM003804.4E-3287150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2987145IPR001471AP2/ERF domain
PfamPF008471.5E-1287137IPR001471AP2/ERF domain
PROSITE profilePS5103222.5187144IPR001471AP2/ERF domain
PRINTSPR003675.8E-98899IPR001471AP2/ERF domain
CDDcd000187.97E-1588146No hitNo description
PRINTSPR003675.8E-9110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAEVQENSIS LALSEIIASG TSCSTLDAVF SYLKDPSAPA GTELSRHRIY ADDGDLLSRK  60
PRNDCPRTVM GEPSFVTKYL IPDKKKVYRG VRQRHWRKWV AEIRLPRNRV RVWLGTYDTA  120
EAAAYAYDRA AYKLRGEYAR LNFPNLRDAT QLGFGNRVRI DEVKTTVDAK IQAIFQKVKR  180
QKLAQRAERK AADCQSLRGF PSTPETGSSV ETSEVVAVSG ATSGSDEAGG CEGGAPPPEM  240
EEEYSLARCP SFDPELIWQV LSMLPATTSR ETLEFLTIRS ICFFGIRIVG GDHRLKVLFQ  300
NLNCYRTELG ILDLRYVMKT ALAWGLHFKL YVRMPNAHAS LPELLTHRDS AS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1884144263ATERF1
3gcc_A6e-1884144263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678458546
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101035.13e-61LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF061
TrEMBLA0A4D9AEW61e-68A0A4D9AEW6_SALSN; EREBP-like factor
STRINGMigut.A00662.1.p4e-55(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-31ERF family protein