PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678451863
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 348aa    MW: 39298.8 Da    PI: 4.7489
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678451863genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19156206256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  678451863 156 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 206
                59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.20E-33155214No hitNo description
SMARTSM003802.4E-39156219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-32156214IPR001471AP2/ERF domain
PROSITE profilePS5103222.998156213IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23156214IPR016177DNA-binding domain
PfamPF008472.7E-12157206IPR001471AP2/ERF domain
PRINTSPR003675.2E-11157168IPR001471AP2/ERF domain
PRINTSPR003675.2E-11179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDSGSREKGK SKKVCGEKED QQRVLAHHQW SPVYHLPDRP SKKTIRGLET FPAFDAPSSA  60
SGFTFPFAID CSPGFPPPTP PPQMISFGSG ENFAFPPFFA AEAAQFQQQQ YPQPQQLLRY  120
WSDALNLSPR GSDSVISHLG QNGRPLLRPP LSATKLYRGV RQRHWGKWVA EIRLPKNRTR  180
LWLGTFDTAE DAAMAYDREA FKLRGENAKL NFPERFLGKK DQQQEQPLPP ENAVLASSSS  240
SATTPIPEAI YPTIYDEEQH PPSEIPEEYP PPEPIDIMNH ADTVDSSDTP PPSDFPWADM  300
ADMWFGSFPS FWGPESPVWD DLDANNNLIL PPNLLPHFRN QDDDFDPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21155215465ATERF1
3gcc_A4e-21155215465ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678451863
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G3C0R23e-72A0A2G3C0R2_CAPCH; Ethylene-responsive transcription factor
TrEMBLA0A3Q7HCK32e-72A0A3Q7HCK3_SOLLC; Uncharacterized protein
TrEMBLS8CDY61e-73S8CDY6_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc07g054220.1.13e-73(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.17e-43ERF family protein