PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678420838
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 293aa    MW: 32884.7 Da    PI: 6.9486
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678420838genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.24.1e-34164222159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+
  678420838 164 LDDGYRWRKYGQKAVKNSPYPRSYYRCTMQKCEVKKRVERSFQDPTVVITTYEGQHNHH 222
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-35149224IPR003657WRKY domain
SuperFamilySSF1182901.29E-29156224IPR003657WRKY domain
PROSITE profilePS5081132.122159224IPR003657WRKY domain
SMARTSM007741.5E-39164223IPR003657WRKY domain
PfamPF031062.9E-26165222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEYLFQPLTG YSPKAQVNEI QSPGYLYFPR WPGGGAPAFQ FSGNSSVAAA AADVNLMLDP  60
SYLSFPDYGS SPFPESRMFH RGKEDEKPAT GETPDTPISS ASTEAAAAGW EMLCKVEKGR  120
SLKEEDASDA DGEDTPKRQV KKGDNKKKRQ PRVAFVTKSE VDQLDDGYRW RKYGQKAVKN  180
SPYPRSYYRC TMQKCEVKKR VERSFQDPTV VITTYEGQHN HHLPANLRGN LAGIFGFPQS  240
PHQNSIFPQD LMAPVPNLYG FCDPFHQQQL SRFPRPGYEL PHDIGHAVPE EES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-301572251078Probable WRKY transcription factor 4
2lex_A9e-301572251078Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678420838
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085274.16e-68probable WRKY transcription factor 71
TrEMBLA0A2G9I1H72e-60A0A2G9I1H7_9LAMI; Uncharacterized protein
STRINGGorai.009G157300.11e-52(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-50WRKY DNA-binding protein 28