PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678394262
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family TCP
Protein Properties Length: 368aa    MW: 41569.6 Da    PI: 7.6614
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678394262genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP143.81.3e-441092512133
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnsssgka 90 
                agkkdrhski+T++g RdRR+Rls++ a++fFdLqd+LG+dk+sktieWL++++k+ai elt++           +++s+s++++ +++ s+ +++s+k 
  678394262 109 AGKKDRHSKICTAQGIRDRRMRLSLQAARKFFDLQDMLGYDKASKTIEWLFTKSKKAIRELTENhppvnsnvsdsDAKSESFVSECDEVISGIEEGSNKD 208
                89**************************************************************888777766433333333366677777666666655 PP

        TCP  91 aksaa.kskksqksaasalnlak.esrakarararertrekmrik 133
                a ++  k++k +++ +  ++++  esr kararar rt+ek++++
  678394262 209 AFKDVeKEEKHSEKLH--SKPNLrESRDKARARARCRTKEKQMTR 251
                5555523333333333..3333359****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.6E-43110250IPR005333Transcription factor, TCP
PROSITE profilePS5136935.875111169IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.882230247IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MYPPSVEAGL LEPWLRPPPT RQNPNSGEEQ LQLLFHFAAP QEQELSMGHR ILYQNQAIPG  60
NPYLGVDQSD KSHVEVKAKG KLLDPKVEKK VDPPVRRRNM GVLAPRRRAG KKDRHSKICT  120
AQGIRDRRMR LSLQAARKFF DLQDMLGYDK ASKTIEWLFT KSKKAIRELT ENHPPVNSNV  180
SDSDAKSESF VSECDEVISG IEEGSNKDAF KDVEKEEKHS EKLHSKPNLR ESRDKARARA  240
RCRTKEKQMT RFTPQIPESA PTENDHHLQK LGFSANPPFE APPPPDQDPA YTDQARILSY  300
GVDYEQQPPD SGTLEKLLGI PSSSSCPHHF TSDSFIDPNT SFLGFLTSWD YLSHERGGSS  360
NCTVTDQI
Cis-element ? help Back to Top
SourceLink
PlantRegMap678394262
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552305.12e-67transcription factor TCP12-like
TrEMBLS8DNE35e-74S8DNE3_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009603184.15e-58(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.14e-30TCP domain protein 12