PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678386478

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Nin-like

Protein Properties

Length: 896aa MW: 98703 Da PI: 5.7317

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678386478	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.7e-28	544	595	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l+++Fs+++kdAAk++gvc+T+LKriCR+yGI+RWP+Rki+++ 678386478 544 AEKHVSLSVLQQHFSGSLKDAAKSIGVCPTTLKRICREYGIARWPSRKINKV 595 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.937	534	615	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-25	548	595	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.31E-19	788	879	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.2E-22	793	876	No hit	No description
PROSITE profile	PS51745	21.563	796	878	IPR000270	PB1 domain
SMART	SM00666	3.6E-20	796	878	IPR000270	PB1 domain
Pfam	PF00564	6.8E-16	797	877	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 896 aa Download sequence Send to blast
MEYPGEEKID DQSTDLDGRS KDEVVMGSLL DDTFSGNAEM MNFDANAGFC SSPLDMIDFP 60 SNFFIMSPLN VASASFPPNF SNHHNPGIIT ENGDMVGATL RCRDKLVFHD TDSHLPLDSK 120 ATDDESEITE KFRSSYYMGK SLISRPPKRS LAEKLLKALH LFKEESGGGI LAQVWLPLKM 180 GDQYILSTCE QPYLLDQTFS GYREISRSFT FSVESKPGSF PGLPGRVFLS KIPEWTSNLL 240 YYKKTEYIRV QYAADYEVRG SIALPILELD PVDASCCAVL ELVTRKEKSN FESEMESVCH 300 ALQSLSKGQR AALLDISDVL RSVCHVHQLP LALAWIPCIW TEELGDEVMK VQPRGSHSAV 360 SGKCVLCVDD TASYVNDKNM KGFLHACLGH FLEEGQGIVG KALKSSHPFF DPDVKEYHVS 420 EYPLVQHARR FGLNAAVAIR LRSTHSENDD YILEFFLPVM VTDAVEQQLL LNSLSSTMQK 480 LCTTLRTVPD ADSPHRDVSA VQSPLCQETI ALQSKTSHCS SELPTLGIQE VGPSLQTGKR 540 RSTAEKHVSL SVLQQHFSGS LKDAAKSIGV CPTTLKRICR EYGIARWPSR KINKVNRSLR 600 KLQGVLDSVQ CVRGGLKLQS TMGALGTSSF VPDSRSRKAA MLPNGGCFIE ESGSMLEDVK 660 PASIPTNGQN DDHLGNSDES WTAIPGPSQW IPGVPHGTTS GERSNAWSLN NSYKSPHSSS 720 GPPLTSQNLN SLMVHEDLDA GNPENDEEAG GDHQPVYANA TSSCNGPASM IAGSSSSSRN 780 SRRHNHGTGA DGHGSRITIK SSYREDTIRF KFDPDDGCDQ LYEMIAKRFQ LQLGQFQLKY 840 LDDEQEWIIL VNDSDMRECL EILEFQGSRH LKVAVFDVAC DIGTSQASNR SLGNKP

Sequence ? help Back to Top

Protein Sequence Length: 896 aa Download sequence Send to blast

MEYPGEEKID DQSTDLDGRS KDEVVMGSLL DDTFSGNAEM MNFDANAGFC SSPLDMIDFP  60
SNFFIMSPLN VASASFPPNF SNHHNPGIIT ENGDMVGATL RCRDKLVFHD TDSHLPLDSK  120
ATDDESEITE KFRSSYYMGK SLISRPPKRS LAEKLLKALH LFKEESGGGI LAQVWLPLKM  180
GDQYILSTCE QPYLLDQTFS GYREISRSFT FSVESKPGSF PGLPGRVFLS KIPEWTSNLL  240
YYKKTEYIRV QYAADYEVRG SIALPILELD PVDASCCAVL ELVTRKEKSN FESEMESVCH  300
ALQSLSKGQR AALLDISDVL RSVCHVHQLP LALAWIPCIW TEELGDEVMK VQPRGSHSAV  360
SGKCVLCVDD TASYVNDKNM KGFLHACLGH FLEEGQGIVG KALKSSHPFF DPDVKEYHVS  420
EYPLVQHARR FGLNAAVAIR LRSTHSENDD YILEFFLPVM VTDAVEQQLL LNSLSSTMQK  480
LCTTLRTVPD ADSPHRDVSA VQSPLCQETI ALQSKTSHCS SELPTLGIQE VGPSLQTGKR  540
RSTAEKHVSL SVLQQHFSGS LKDAAKSIGV CPTTLKRICR EYGIARWPSR KINKVNRSLR  600
KLQGVLDSVQ CVRGGLKLQS TMGALGTSSF VPDSRSRKAA MLPNGGCFIE ESGSMLEDVK  660
PASIPTNGQN DDHLGNSDES WTAIPGPSQW IPGVPHGTTS GERSNAWSLN NSYKSPHSSS  720
GPPLTSQNLN SLMVHEDLDA GNPENDEEAG GDHQPVYANA TSSCNGPASM IAGSSSSSRN  780
SRRHNHGTGA DGHGSRITIK SSYREDTIRF KFDPDDGCDQ LYEMIAKRFQ LQLGQFQLKY  840
LDDEQEWIIL VNDSDMRECL EILEFQGSRH LKVAVFDVAC DIGTSQASNR SLGNKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678386478

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073897.1	0.0	protein NLP9
TrEMBL	A0A2G9GDZ0	0.0	A0A2G9GDZ0_9LAMI; Uncharacterized protein
STRING	Solyc11g045350.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein