PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678364323
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 303aa    MW: 33977.6 Da    PI: 5.9237
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678364323genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.56.6e-34172229259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk++ers +dp +v++tYeg+Hnh+
  678364323 172 EDGYKWRKYGQKAVKNSPFPRSYYRCTTQRCPVKKHIERSLHDPMIVITTYEGQHNHH 229
                8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-35156231IPR003657WRKY domain
SuperFamilySSF1182902.09E-29163231IPR003657WRKY domain
PROSITE profilePS5081132.879166231IPR003657WRKY domain
SMARTSM007742.9E-39171230IPR003657WRKY domain
PfamPF031065.6E-26172229IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSRDFTGSHL HDDQPRSTAS FPFPGVFSDS DDFQVESILD SELRLLDPSC FSFPEMLQES  60
ALNYSHTPVS ESGPFASQRD DQEEKAATGE TPVTPNSSMS SSSAEAVAGD YDPIKGKQEM  120
EVSPKEVAED CEENPKKESN HSDRCKLKKK GVRKERQPRY AFMTKSEIDH LEDGYKWRKY  180
GQKAVKNSPF PRSYYRCTTQ RCPVKKHIER SLHDPMIVIT TYEGQHNHHV PTAFRGNSAG  240
MFSPSMLAPS LPFQGPSSPQ MPAPHLYSFD GSSSGSYPQQ PQEQLADYGL LQDIFHSVPN  300
EKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-29161231777Probable WRKY transcription factor 4
2lex_A6e-29161231777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678364323
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022879638.13e-85probable WRKY transcription factor 71
SwissprotQ8VWJ21e-46WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A4D9AWL68e-72A0A4D9AWL6_SALSN; Uncharacterized protein
STRINGPOPTR_0001s34520.15e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.18e-48WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]