PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678339284
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 447aa    MW: 49980.7 Da    PI: 6.1178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678339284genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.4e-132872348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +W+ eEde+l + ++++G+++W  Ia+++   ++  qc+ rw++yl
        678339284 28 SWSSEEDEILREQIRLHGTENWVIIASKFK-DKSTRQCRRRWFTYL 72
                     6****************************9.*************97 PP
2Myb_DNA-binding22.33.1e-071101381646
                      HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  16 vkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       k +G++ W+ Ia+ +  gRt++ +k+r+ +
        678339284 110 QKIFGNR-WTEIAKVVS-GRTDNAVKNRFTT 138
                      6889***.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0812176IPR017930Myb domain
SMARTSM007176.3E-122574IPR001005SANT/Myb domain
CDDcd001671.66E-112872No hitNo description
SuperFamilySSF466898.63E-242876IPR009057Homeodomain-like
PfamPF139213.3E-142989No hitNo description
Gene3DG3DSA:1.10.10.602.1E-192979IPR009057Homeodomain-like
SMARTSM007173.2E-677142IPR001005SANT/Myb domain
PROSITE profilePS512949.34177144IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-1680143IPR009057Homeodomain-like
CDDcd001675.17E-781139No hitNo description
SuperFamilySSF466898.63E-24112141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MKKKEILSSD ASGSELPEQK KRQRHIVSWS SEEDEILREQ IRLHGTENWV IIASKFKDKS  60
TRQCRRRWFT YLNSDFKRGG WSPEEDMLLC EVKTAIFATI FVLGDREPAQ KIFGNRWTEI  120
AKVVSGRTDN AVKNRFTTLC KRREKHEEAE RRSSGSALAN ANNQIVFPSG ISADGGSETT  180
PSLKRKRMHI SDTSVNRVGE ASGENVAAKD LHTLVSESAC RNITRLPTQQ QLEEKSLDTA  240
ENKGAHLAFL SKDDPKLLAL MQQAELLSSL AIKVNSEQTD ESLEDAWTAL EDFLKQTKMS  300
HRPASRNPDD DCQLDNCNEA VENEGSTRDH YESSVASSEY SSGSTLPSSD KTEVCQGEIC  360
LPQHENSQEF EAHQSVNKHS VAEVKYRRLK PSRIEVGNML ACSDVKCDDG TIAYGCPNTE  420
FDSPIHVNPL FRALAAAIPS PKFSESV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-232914310107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678339284
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594621e-52KF059462.1 Salvia miltiorrhiza MYB-related transcription factor (MYB108) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071018.11e-138transcription factor MYB124-like isoform X1
TrEMBLA0A2G9I5R81e-141A0A2G9I5R8_9LAMI; Uncharacterized protein
STRINGVIT_01s0026g01910.t011e-121(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41242134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.11e-100myb domain protein 88