PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678291027
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 332aa    MW: 37266.5 Da    PI: 5.4418
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678291027genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19143193256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  678291027 143 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 193
                59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.93E-35142202No hitNo description
SMARTSM003808.0E-40143206IPR001471AP2/ERF domain
PROSITE profilePS5103223.09143200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-32143201IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23143201IPR016177DNA-binding domain
PfamPF008472.5E-12144193IPR001471AP2/ERF domain
PRINTSPR003674.8E-11144155IPR001471AP2/ERF domain
PRINTSPR003674.8E-11166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDSGREKGKS KKIGIQMEED KRLGVRRTAV FDNCPYRKIK SPDPRRSTFN PSSSEAKTAF  60
VFPFSMDTPR AVWDFTLPPQ QELYQMVSSH ESSISPPPPH QHQLVLQQQQ LLLCWSNALN  120
PSPGGMSSNA INSLRPPIGA TKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFDTAEDAA  180
MAYDREAFKL RGENATLNFP ELFLGKGKHE EQSSENAVPV PEAIEQQNPP IEYSQPSEST  240
PVSMETNPPA SNTDKYCSFA WDDISEGWLD TFPGDWGPGS SVWDDLDPNN DLLLPTNLLH  300
FRNLDFGPEQ ITSKTCSSSS SSSPIFSNDY TG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-22142200160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-22142200463ATERF1
3gcc_A8e-22142200463ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678291027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6QX352e-60A0A2R6QX35_ACTCH; Ethylene-responsive transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-42ERF family protein