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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_26386-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | CAMTA | ||||||||
Protein Properties | Length: 1159aa MW: 127795 Da PI: 5.6776 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 172.3 | 7.1e-54 | 149 | 264 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 +e k+rwlk++e++ iL n+e+ ++t+e++++p+sg+l+Lynr++ r+frkDGy w++kkdg+tv E+he+LKvg++++l+cyYah+e+np fq TRIUR3_26386-P1 149 REaKSRWLKPSEVYYILLNHEQLQITHEPPNKPPSGALFLYNRRVNRFFRKDGYAWRRKKDGRTVGEAHERLKVGNIDALSCYYAHGEQNPYFQ 242 4559****************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylev 117 rrc+w+Le ++++ivlv+y+ev TRIUR3_26386-P1 243 RRCFWMLEPAYDHIVLVQYREV 264 ********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 76.685 | 144 | 270 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.7E-69 | 147 | 265 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.1E-46 | 150 | 263 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 9.8E-16 | 586 | 668 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 6.1E-7 | 586 | 667 | IPR002909 | IPT domain |
Gene3D | G3DSA:2.60.40.10 | 1.0E-6 | 586 | 677 | IPR013783 | Immunoglobulin-like fold |
Gene3D | G3DSA:1.25.40.20 | 1.7E-15 | 778 | 872 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.11E-15 | 779 | 874 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.804 | 780 | 872 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.59E-9 | 785 | 872 | No hit | No description |
PROSITE profile | PS50088 | 11.167 | 813 | 845 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 9.9E-5 | 813 | 842 | IPR002110 | Ankyrin repeat |
Pfam | PF13637 | 3.3E-5 | 815 | 872 | No hit | No description |
SMART | SM00015 | 33 | 933 | 955 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.218 | 934 | 963 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.38E-6 | 980 | 1039 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 6.9 | 993 | 1013 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.462 | 993 | 1021 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0031 | 994 | 1012 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 3.0E-6 | 1014 | 1036 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.42 | 1015 | 1043 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 3.8E-5 | 1016 | 1036 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1159 aa Download sequence Send to blast |
MACCSAVSAA WATVKSASTS SMLKPGADAS SYSGYSSSSS SGSATSIGAG CCSSPSSSAA 60 FSSSFSGSSK SRDSPTATPA ACAACLAWIS CSIWYRRSGV SIVCVVMFCW TIAKLESVGR 120 EAERERWGGW ARAGGAERRE GFDINVLLRE AKSRWLKPSE VYYILLNHEQ LQITHEPPNK 180 PPSGALFLYN RRVNRFFRKD GYAWRRKKDG RTVGEAHERL KVGNIDALSC YYAHGEQNPY 240 FQRRCFWMLE PAYDHIVLVQ YREVAEGRYY STLSNGSAGS LSTLSYPNDI HGKHGSTSDF 300 SEGNESHQSS VTEVSSYSAN KEYNHDSGVL LSIPELQQST VMGMPELDQS SLERSSEFCM 360 VNNNDSTNTS GLNQALKSIA EQLSLGDDDY IYINQARSLD FTTNTEAADV QGNQTSNSLG 420 DDEANQIRPE GAHGVGRGIS SSWENVLQSD LGLPASSTYQ FGAHYQQSSE YQPPGGLDGS 480 NLQLQISAAK RFLLGSEDPI DSPSYNFIPR DEGINGINTL SAHDSSLESC LNPDWQRTTP 540 VTLQSSSYQS NSCGYEISEF FDNGQFELSS EEDTRLALKQ KQQFSIREIS PEWAFCYEIT 600 KVIITGDFLC DPSNICWAVM FGDTEVPVEI VQPGVLRCHT PLHSAGKLTL CISTGNRKVC 660 SEIKDFEFRA KSTASSFTDF APSSMKSTEE LSLLAKFARI LLCDNGSSAA SGDDPQPGQS 720 PKLKMNEDNW QRLINELDVG CENPPSRVDW IMEELLKSKL QQWLSLRLQG DDGTCSLSKN 780 EQGIIHLISA LGYDWALSSV LSAGVGINLR DSNGWTALHW AAYYGREKMV AALLAAGASA 840 PAVTDPTAQD PVGKSAAFLA SERGHVGLAG YLSEVALTSY LASLTIEESG ISEGLAAIKA 900 ERAVESISRR SAQLHGGTED ELSLKDSLAA VRNAAQAAAR IQNAFRAFSF RRRQHKDARL 960 KDEYGMTQED IDELAAASRL YYQHHVSNGQ FCDKAAVSIQ KKYRGWKGRK NFLQMRRNVV 1020 KIQAHVRGHQ VRKKYKTFVS TVSVLEKVIL RWRRKGHGLR GFRAEQSVMI EAEEGEEEDD 1080 DDFEDDEAVK IFRRQKVDES VKESVSRVLS MVDSPEARMQ YRRMLEEFRQ ATAELGASDK 1140 ATSSILDNDL LVENNKFTC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147564.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
TrEMBL | M8A8K2 | 0.0 | M8A8K2_TRIUA; Calmodulin-binding transcription activator 1 | ||||
STRING | TRIUR3_26386-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6238 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09410.1 | 2e-94 | ethylene induced calmodulin binding protein |