PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_23040-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CAMTA

Protein Properties

Length: 1536aa MW: 172538 Da PI: 8.1555

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_23040-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	167.4	2.3e-52	1344	1460	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 ke ++rwl+++ei++iL+n+++++++ e+++ p sgsl+L++rk++r frkDG++w+kkk+gktv E+he+LK gg++vl+cyYah+een + TRIUR3_23040-P1 1344 KEaQTRWLRSTEICEILKNYRNFHIAPEPPNMPASGSLFLFDRKVLRLFRKDGHNWRKKKNGKTVIEAHERLKSGGIDVLHCYYAHGEENIN 1435 5559************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylevk 118 fqrr+yw+Lee++ +i lvhylevk TRIUR3_23040-P1 1436 FQRRSYWMLEEDYMHIALVHYLEVK 1460 ********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52540	4.64E-43	220	473	IPR027417	P-loop containing nucleoside triphosphate hydrolase
CDD	cd00009	0.0034	224	268	No hit	No description
Gene3D	G3DSA:3.40.50.300	6.3E-15	227	346	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	5.0E-46	229	499	IPR002182	NB-ARC
PRINTS	PR00364	6.9E-13	247	262	No hit	No description
PRINTS	PR00364	6.9E-13	320	334	No hit	No description
PRINTS	PR00364	6.9E-13	406	420	No hit	No description
SuperFamily	SSF52047	1.96E-21	585	916	No hit	No description
Gene3D	G3DSA:3.80.10.10	1.6E-10	638	905	IPR032675	Leucine-rich repeat domain, L domain-like
PRINTS	PR00364	6.9E-13	711	727	No hit	No description
PROSITE profile	PS51437	75.051	1339	1465	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.7E-68	1342	1460	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	9.0E-46	1345	1459	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS50405	15.732	1429	1536	IPR010987	Glutathione S-transferase, C-terminal-like
SuperFamily	SSF47616	1.16E-19	1458	1535	IPR010987	Glutathione S-transferase, C-terminal-like
Pfam	PF00043	4.2E-12	1458	1528	IPR004046	Glutathione S-transferase, C-terminal
Gene3D	G3DSA:1.20.1050.10	1.9E-23	1458	1533	IPR010987	Glutathione S-transferase, C-terminal-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0043531	Molecular Function	ADP binding

Sequence ? help Back to Top
Protein Sequence Length: 1536 aa Download sequence Send to blast
MGSSLAVTGA AMDAPVSSSL AEMGAMNAPV SSSLGVMGSL LRKIDSLLPL DYRLRGPLKD 60 RVALLKVDLE EISVALVEQS MVDSPNEMAK YWMNEVRELC YDIEDFIDDM MLTHADAKMR 120 SVQSFKVGRV KISWLPKTVR QCTRATKIAE LRDLVREAIE RHGRYLDGCT SSSRSLFTVY 180 GHIPLMYTEA ANYLVGVDDA KTKLIKWITN EEQHPLSEAA NYLVGVNDAK TKLIKLLTDE 240 KEQKLKIVAI TGHAGVGKTT LAKQLYHEVG QQFECRAFVR ASRKPDMTRL LEGILSQVEQ 300 HRCPSNSYTV QNLIDNLTKH LQNKRYVIVI DDLWETISWD IVASAFPEEI AGVALECCDY 360 QSDNILKMKP LGGEDSGNLL LNLVFGPERL CPEQLKGALD IIIAKCAGLP LATICVSGLL 420 TTQPDNPELW QHVQEFLCSN LSTNSTLEET LQEILKLSYI SLPHYLKTCL MYLSVYPEGC 480 TMWKFDLAKQ WIAEGFICAI EGTDTGEVAD SYFEELVNRG MIQPVDINYN GEVLSCTLHH 540 AVLDLITLES TEERFITSLD YSQTIRGHYS KARRLSLHFS NPRYAKKPTG LTLSKVRSIG 600 FFGIIKCVPT IVGFKHLRVL ILEFWGDQRG IMSFDLTRIS RFFQLRYLKI SCDASVEVEL 660 PSQMRMLRYL ETLIIDAAVS AVPSDIIHLP GLLHLSLGDK TDLPDEVGRI RSLRALHCFD 720 LSSNSEDSVL SLGDLLNLQD LNLTYRTEES DDHLKRNLAA LASSLGKLVN LKSVTLAPSA 780 SGTAIYHDVW SSMSSLPFFL QRLELLPPIC IFSRLPQCLG QLRKLCILTV VVNELLMEDM 840 DILTGLSALT VFSLHVRQPT LESIIFKKRA FLGLKCFKYT CGVLFLTFQE EAFPNLQRLE 900 LSFNAHRGEQ YYDYLSGIGY LLNLKEIAGT IGAATDAEES DRRVAESAFT DAIRKHPRFP 960 SYDHVKRVDW VHEEYQLRTQ AKDSSREKYE TLGKQHGRKE GDSLHEQTRI LLKETGEETK 1020 QCTNSCQMIK FSLGLDSDPT KDRKNSSIGI GFHSYKPKGS KGIFPTKILS YEIPTKILQT 1080 KGGLKGTHQV KETRRVLMMM EDQGLAVAED DSFAALPLLP KLPRRAPNTI AATLAGEMIA 1140 QSTIPHHTSV QTPPCHHEAV GVTALHPGSL TMTDNVGSGT TTLAFGHLPS LSRRLLAGAD 1200 LPSLAFRSPR GRRASTLASS RRSNLIAAFS KPKLSSRTDP RGASPWWRRQ LVRAPHQTPP 1260 YAQMRGTTSG DPGRGRGRRE RYEMGEGGGH RRLLLPGALP TGGVDGRGGG WRSSGGGGVH 1320 LPCHLGGRDG AEPSFSQDME RILKEAQTRW LRSTEICEIL KNYRNFHIAP EPPNMPASGS 1380 LFLFDRKVLR LFRKDGHNWR KKKNGKTVIE AHERLKSGGI DVLHCYYAHG EENINFQRRS 1440 YWMLEEDYMH IALVHYLEVK EKIEKLKKLL EVYESRLPRS KYLPGDFISL ADLSHFSFMR 1500 YFMTTEYADQ LDTYPHVKAW WAALLARPSV KKLYDW

Sequence ? help Back to Top

Protein Sequence Length: 1536 aa Download sequence Send to blast

MGSSLAVTGA AMDAPVSSSL AEMGAMNAPV SSSLGVMGSL LRKIDSLLPL DYRLRGPLKD  60
RVALLKVDLE EISVALVEQS MVDSPNEMAK YWMNEVRELC YDIEDFIDDM MLTHADAKMR  120
SVQSFKVGRV KISWLPKTVR QCTRATKIAE LRDLVREAIE RHGRYLDGCT SSSRSLFTVY  180
GHIPLMYTEA ANYLVGVDDA KTKLIKWITN EEQHPLSEAA NYLVGVNDAK TKLIKLLTDE  240
KEQKLKIVAI TGHAGVGKTT LAKQLYHEVG QQFECRAFVR ASRKPDMTRL LEGILSQVEQ  300
HRCPSNSYTV QNLIDNLTKH LQNKRYVIVI DDLWETISWD IVASAFPEEI AGVALECCDY  360
QSDNILKMKP LGGEDSGNLL LNLVFGPERL CPEQLKGALD IIIAKCAGLP LATICVSGLL  420
TTQPDNPELW QHVQEFLCSN LSTNSTLEET LQEILKLSYI SLPHYLKTCL MYLSVYPEGC  480
TMWKFDLAKQ WIAEGFICAI EGTDTGEVAD SYFEELVNRG MIQPVDINYN GEVLSCTLHH  540
AVLDLITLES TEERFITSLD YSQTIRGHYS KARRLSLHFS NPRYAKKPTG LTLSKVRSIG  600
FFGIIKCVPT IVGFKHLRVL ILEFWGDQRG IMSFDLTRIS RFFQLRYLKI SCDASVEVEL  660
PSQMRMLRYL ETLIIDAAVS AVPSDIIHLP GLLHLSLGDK TDLPDEVGRI RSLRALHCFD  720
LSSNSEDSVL SLGDLLNLQD LNLTYRTEES DDHLKRNLAA LASSLGKLVN LKSVTLAPSA  780
SGTAIYHDVW SSMSSLPFFL QRLELLPPIC IFSRLPQCLG QLRKLCILTV VVNELLMEDM  840
DILTGLSALT VFSLHVRQPT LESIIFKKRA FLGLKCFKYT CGVLFLTFQE EAFPNLQRLE  900
LSFNAHRGEQ YYDYLSGIGY LLNLKEIAGT IGAATDAEES DRRVAESAFT DAIRKHPRFP  960
SYDHVKRVDW VHEEYQLRTQ AKDSSREKYE TLGKQHGRKE GDSLHEQTRI LLKETGEETK  1020
QCTNSCQMIK FSLGLDSDPT KDRKNSSIGI GFHSYKPKGS KGIFPTKILS YEIPTKILQT  1080
KGGLKGTHQV KETRRVLMMM EDQGLAVAED DSFAALPLLP KLPRRAPNTI AATLAGEMIA  1140
QSTIPHHTSV QTPPCHHEAV GVTALHPGSL TMTDNVGSGT TTLAFGHLPS LSRRLLAGAD  1200
LPSLAFRSPR GRRASTLASS RRSNLIAAFS KPKLSSRTDP RGASPWWRRQ LVRAPHQTPP  1260
YAQMRGTTSG DPGRGRGRRE RYEMGEGGGH RRLLLPGALP TGGVDGRGGG WRSSGGGGVH  1320
LPCHLGGRDG AEPSFSQDME RILKEAQTRW LRSTEICEIL KNYRNFHIAP EPPNMPASGS  1380
LFLFDRKVLR LFRKDGHNWR KKKNGKTVIE AHERLKSGGI DVLHCYYAHG EENINFQRRS  1440
YWMLEEDYMH IALVHYLEVK EKIEKLKKLL EVYESRLPRS KYLPGDFISL ADLSHFSFMR  1500
YFMTTEYADQ LDTYPHVKAW WAALLARPSV KKLYDW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j5t_C	1e-38	35	555	4	504	Disease resistance RPP13-like protein 4
6j5t_F	1e-38	35	555	4	504	Disease resistance RPP13-like protein 4
6j5t_G	1e-38	35	555	4	504	Disease resistance RPP13-like protein 4
6j5t_L	1e-38	35	555	4	504	Disease resistance RPP13-like protein 4
6j5t_O	1e-38	35	555	4	504	Disease resistance RPP13-like protein 4
6j5u_A	1e-38	35	555	4	504	Disease resistance RPP13-like protein 4
6j5v_A	1e-38	35	555	4	504	Disease resistance RPP13-like protein 4
6j5w_A	1e-38	35	555	4	504	Disease resistance RPP13-like protein 4
6j6i_C	1e-38	35	555	4	504	Disease resistance RPP13-like protein 4
6j6i_F	1e-38	35	555	4	504	Disease resistance RPP13-like protein 4
6j6i_G	1e-38	35	555	4	504	Disease resistance RPP13-like protein 4
6j6i_L	1e-38	35	555	4	504	Disease resistance RPP13-like protein 4
6j6i_O	1e-38	35	555	4	504	Disease resistance RPP13-like protein 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. At the opposite of cultivars Aichi asahi and Sasanishiki, the cultivars Nipponbare, Mokoto and Hitomebore don't recognize the effector avirulence protein AVR-Pia from M.oryzae. {ECO:0000269\|PubMed:21251109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365210	1e-174	AK365210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2032B14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160449.1	0.0	uncharacterized protein LOC109745746
Swissprot	Q2R8L1	0.0	RGA5S_ORYSJ; Disease resistance protein RGA5
TrEMBL	M7Z655	0.0	M7Z655_TRIUA; Calmodulin-binding transcription activator 2
STRING	TRIUR3_23040-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5435	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	3e-55	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okuyama Y, et al. A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes. Plant J., 2011. 66(3): p. 467-79 [PMID:21251109]