PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA37131
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 595aa    MW: 66541.7 Da    PI: 5.1226
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA37131genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.81.5e-51221481127
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                lp GfrF+P+deelv++yL+ k++g+  e+  vi+e+di+k+ePwd+p  + +++++ ew+fF+++d+ky++g+r nrat++gy
  Tp57577_TGAC_v2_mRNA37131  22 LPLGFRFRPSDEELVDYYLRSKINGNGDEV-WVIREIDICKWEPWDMPglSVIRNKDPEWFFFCPQDRKYPNGHRLNRATTHGY 104
                                699************************999.89***************6447777888************************** PP

                        NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                                Wkatgkd++++s ++ l+g+kktLvfy+grapkg++t+Wvmheyr
  Tp57577_TGAC_v2_mRNA37131 105 WKATGKDRRIKS-GNILIGMKKTLVFYSGRAPKGKRTNWVMHEYR 148
                                ************.99*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-6112172IPR003441NAC domain
PROSITE profilePS5100555.60622172IPR003441NAC domain
PfamPF023654.4E-2723148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MGSLDCVPSL DHGMAVLPLN SLPLGFRFRP SDEELVDYYL RSKINGNGDE VWVIREIDIC  60
KWEPWDMPGL SVIRNKDPEW FFFCPQDRKY PNGHRLNRAT THGYWKATGK DRRIKSGNIL  120
IGMKKTLVFY SGRAPKGKRT NWVMHEYRPT LKELDGTNPG QNPYVLCRLF KKNDESLEVS  180
NCGEVEQATP APLTANYSPE EIQSDQAPIT ASTSQVTEED KQLPFIPDVS EETISNVITS  240
VDCHSDGYDA HDAQNQIVKQ AAEEDQASIL DMYYNPKDGL LLDDRLFSPV LAHMPQEFNY  300
QANNESDGQY GLQYGTNEIN ISDFLNYNLN WDQLPSEEFS SHQQNFSLFN VIKDNGSGSE  360
SEAGSNITGM QAAYSQEAIA RSFPSATTPS FNTFDHSGDD QKSNVVLLQN NFQTSFPSDV  420
NYGEVCNVVN GYDQPSNYNN TVMPAESEII RRARPARDEQ LKTNHMQGTA QRRIRLKVEQ  480
VADGSSTQEQ HNSKPSIAVE KKAAEDHAAD AESATRTNHA YKQQKASKSI DNRKISQKAA  540
NAGGLGDFLS VGRGPFRSKT SSNRVTLWSS VFVVSASVLV SLVAFTNIWE YIKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-432117514171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA37131
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602412.10.0NAC domain-containing protein 62
TrEMBLA0A2K3MZ680.0A0A2K3MZ68_TRIPR; NAC domain-containing protein
STRINGAES726640.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.12e-91NAC 014