PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32482
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 538aa    MW: 59483 Da    PI: 7.0756
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32482genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43.1e-16741135
                       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                               C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Tp57577_TGAC_v2_mRNA32482  7 CHHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
                               ****************66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.0E-11155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-11445No hitNo description
CDDcd002023.38E-17666No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003205.1E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.121740IPR000679Zinc finger, GATA-type
PfamPF139191.4E-10280369IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGKHGPCHHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAETDDFDDQ  60
KASRVKSVSL NKNKEVKSLK RKQNRDNVAS GGFAYDYNQG FQKAVDEDIS NRSSSGSALS  120
NSESCAQFGG TDASDLTGPA QSVVWDTTVP SKKRTCVGRS KPSSVEKLTK DLCTILHEQQ  180
SYFSASSEED LLYESEAPMV SVEIGHGSVL IRHPSYVARD EESEASSLSF DNRQYLMSEA  240
YSYSGAVLTH NGSSRTNFSS QGAGKARNSA VHGMKQEQVK SDKSQIEREQ ILGSHDSPLC  300
LIDLNDVVNY EEFSRNLSNE EQQQLLKFLP AVDTAKLPDS LNVMFDSSQF KENLTYFQQL  360
LVEGVFDISL SGAKPEDCKT LKRYALSNFT KSKWVEHYHL LKRCKNRAEK SDTPGSAASA  420
NIANTKRKRD SRIQNFSEVK TIMRSPKRII TKTSYEGKLV DDGSFYNPKS LFPLPPDASS  480
HLLDSFNFVE DSSDQDLLLD VPSNNSFPQA ELLHPNLSYG AQASTSSSSA YSHLMNH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32482
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9317351e-129CR931735.1 Medicago truncatula chromosome 5 clone mth2-37f4, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511735.10.0GATA transcription factor 26
SwissprotQ8W4H11e-157GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2K3NQE60.0A0A2K3NQE6_TRIPR; GATA transcription factor 26-like protein
STRINGXP_004511735.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-159GATA transcription factor 26