PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA27901

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Nin-like

Protein Properties

Length: 981aa MW: 108822 Da PI: 5.1995

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA27901	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.6	1.3e-28	571	621	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Tp57577_TGAC_v2_mRNA27901 571 EKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 621 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.677	560	641	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-25	574	621	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.83E-21	882	970	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-25	884	966	No hit	No description
SMART	SM00666	7.6E-25	884	967	IPR000270	PB1 domain
PROSITE profile	PS51745	24.364	884	967	IPR000270	PB1 domain
Pfam	PF00564	2.4E-18	884	966	IPR000270	PB1 domain
CDD	cd06407	1.07E-33	885	966	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 981 aa Download sequence Send to blast
MPESEEENQD FPPKTKTSLE EHVCAMDFDL DLETSWPLDH MSFISNPMSP FLFSTISDQP 60 SSPLWDFTDG EDENHNKLAA SAFSDCHKIF SCDSNSITEK PVEKDDNKTL LPPLLPPIEH 120 LDRYCGIKEK MTQALRYFKE LTEMNVLAQV WAPVRNGNRF VLTTSGQPFM LDPHSNGLNQ 180 YRTVSLMYKF SVDGENDGTL GLPGRVFQQK LPEWSPNVLY YSSKEYPRRD HAQHYNVRGT 240 LALPVFEPSL PSCIGVLELI MTSPKINYAP EVEKICKALE AVNLRSSEIL DHPFTQICNE 300 GRQNALSEIL EILTVVCETH NLPLAQTWVP CRHRSVLAHG GGFKKSCSSF DGSCMGQVCM 360 STTEVASYII DAHLWGFREA CVEHHLQHGQ GVAGRAFLSQ NMSFCSNITQ FCKTDYPLVH 420 YALMFGLIGC FAICLRSFYT GDDDYVLEFF LPPGITEFHE QKTLLGSILA TLKEHFQSLK 480 IAAGVELEEN GPIEIIEATD EGIRLRTESI PIAQSIKSPF IPDASPNMEE VPQDDPSGIH 540 GEDIGGSINP MSPLGNKNIK KPSERKRGKT EKSISLEVLQ RYFAGSLKDA AKSLGVCPTT 600 MKRICRQHGI SRWPSRKINK VNRSLSKLKR VIESVQGAEG AFDLNSLSNN QLPIVSSFPE 660 PSTPNKSNQQ GSLNIKPSEP QMKENEFDAS KVSETNIQAV MEDQLLGGRK HSLDKEVIND 720 KGVSIREIGN DRKRTRTRSG SSEDSTNPAS HGSCHGSPPN EISTVKDLFI PSNNEQCIVL 780 RGSPESRVQP TNAFNSPTAH CLPDNVLAEL QEPFGGMLIE DAGSSKDLRN LCPSVAEAIL 840 EDMAPEACGT NLPGSYMAPP KQCMDTINNN NSVMPFAVRK EMKTVTIKAT YREDIIRFRV 900 SLNCGIVELK EEVSKRLKLE VGTFDIKYMD DDNEWVLIAC DADLQECMFV SRSSGGSNII 960 RVLVHDITSN LGSSCESSGE *

Sequence ? help Back to Top

Protein Sequence Length: 981 aa Download sequence Send to blast

MPESEEENQD FPPKTKTSLE EHVCAMDFDL DLETSWPLDH MSFISNPMSP FLFSTISDQP  60
SSPLWDFTDG EDENHNKLAA SAFSDCHKIF SCDSNSITEK PVEKDDNKTL LPPLLPPIEH  120
LDRYCGIKEK MTQALRYFKE LTEMNVLAQV WAPVRNGNRF VLTTSGQPFM LDPHSNGLNQ  180
YRTVSLMYKF SVDGENDGTL GLPGRVFQQK LPEWSPNVLY YSSKEYPRRD HAQHYNVRGT  240
LALPVFEPSL PSCIGVLELI MTSPKINYAP EVEKICKALE AVNLRSSEIL DHPFTQICNE  300
GRQNALSEIL EILTVVCETH NLPLAQTWVP CRHRSVLAHG GGFKKSCSSF DGSCMGQVCM  360
STTEVASYII DAHLWGFREA CVEHHLQHGQ GVAGRAFLSQ NMSFCSNITQ FCKTDYPLVH  420
YALMFGLIGC FAICLRSFYT GDDDYVLEFF LPPGITEFHE QKTLLGSILA TLKEHFQSLK  480
IAAGVELEEN GPIEIIEATD EGIRLRTESI PIAQSIKSPF IPDASPNMEE VPQDDPSGIH  540
GEDIGGSINP MSPLGNKNIK KPSERKRGKT EKSISLEVLQ RYFAGSLKDA AKSLGVCPTT  600
MKRICRQHGI SRWPSRKINK VNRSLSKLKR VIESVQGAEG AFDLNSLSNN QLPIVSSFPE  660
PSTPNKSNQQ GSLNIKPSEP QMKENEFDAS KVSETNIQAV MEDQLLGGRK HSLDKEVIND  720
KGVSIREIGN DRKRTRTRSG SSEDSTNPAS HGSCHGSPPN EISTVKDLFI PSNNEQCIVL  780
RGSPESRVQP TNAFNSPTAH CLPDNVLAEL QEPFGGMLIE DAGSSKDLRN LCPSVAEAIL  840
EDMAPEACGT NLPGSYMAPP KQCMDTINNN NSVMPFAVRK EMKTVTIKAT YREDIIRFRV  900
SLNCGIVELK EEVSKRLKLE VGTFDIKYMD DDNEWVLIAC DADLQECMFV SRSSGGSNII  960
RVLVHDITSN LGSSCESSGE *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA27901

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC131240	0.0	AC131240.32 Medicago truncatula clone mth2-33j22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003592270.1	0.0	protein NLP6 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2K3PMA1	0.0	A0A2K3PMA1_TRIPR; Protein NLP6-like
STRING	AES62521	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA27901

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]