PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26647
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 543aa    MW: 60125.5 Da    PI: 6.5815
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26647genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.2e-16741135
                       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                               C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Tp57577_TGAC_v2_mRNA26647  7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
                               ****************66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-11545No hitNo description
CDDcd002021.92E-16652No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003209.9E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.3E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139196.5E-9285369IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RTDTVDYDDQ  60
RVSRLKIVSL NKNKEVKLVK RKKNYDNAYT ASGEFTPEYN QGFLKAVDED TSNRSSSGSA  120
ISNSESCVQF CGTDASDLTG PAQSVVWDTA VPSKKRTCGG RLKHSSVEKL TKDLCTILHE  180
QQQSCFSASS EEELLFESET PMVSVEIGHG SMLIRHPSSI ARDEESETSS LSVDNKQCLM  240
NEAYSFYGSI PMLSDYTGMN FSSQGVAKVR NSAGQRMQQE QLEREKSRLE KIEVLGNHDS  300
PLCIIDLNDV VNYEEFSRNL TNEEQQQLLK YLPVVDTAKL PDSLKIMFNS FQFKEDLTYF  360
QKLLGEGVLD ISLLGANPED CKTLKRLALS NLSKSKWVKH YNFLKKGGIK TEKYDDMESP  420
AVASSNTANT KRLRVSQNQN FPELKTTMRS PKRVIVKAGC GGKEVVDGSS ISPESLFALP  480
HNGGLHMLDS SNFFDESSDQ DLLLEFPSNN SFPQAELLLP NSSLVAQGST SSSSVYSHVT  540
RP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26647
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024637991.10.0GATA transcription factor 26
SwissprotQ8W4H11e-143GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2K3NRS90.0A0A2K3NRS9_TRIPR; GATA transcription factor 26-like protein
STRINGXP_004508957.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-124GATA transcription factor 26