PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18915
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family S1Fa-like
Protein Properties Length: 84aa    MW: 9195.87 Da    PI: 10.5229
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18915genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA133.26.7e-421983670
                       S1FA  6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                                 ++G+nPGlivllvvgglll+fl+gny+ly+yaqk++PPrkkkPvskkk+k+e+lkqGv++PGe
  Tp57577_TGAC_v2_mRNA18915 19 NASQGFNPGLIVLLVVGGLLLTFLIGNYALYIYAQKTIPPRKKKPVSKKKMKKERLKQGVSAPGE 83
                               4569************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190136.0E-52083No hitNo description
PfamPF046892.6E-402083IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MADDFDFSDK IPPSFDRVNA SQGFNPGLIV LLVVGGLLLT FLIGNYALYI YAQKTIPPRK  60
KKPVSKKKMK KERLKQGVSA PGE*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18915
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.21e-31DNA-binding protein S1FA
RefseqXP_024026346.11e-31DNA-binding protein S1FA
SwissprotQ7XLX61e-14S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A2K3L2V22e-52A0A2K3L2V2_TRIPR; DNA-binding protein s1fa2
STRINGLus100150732e-28(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54093355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09735.18e-07S1FA-like DNA-binding protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]