PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA18904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 77aa MW: 8191.85 Da PI: 10.933 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 133.9 | 3.9e-42 | 11 | 76 | 5 | 70 |
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++ ++G+nPGlivllvvgglll+fl+gny+lyvyaqk++PPrkkkP+skkk+k+e+lkqGv++PGe Tp57577_TGAC_v2_mRNA18904 11 NAGSQGFNPGLIVLLVVGGLLLTFLIGNYVLYVYAQKTIPPRKKKPISKKKMKKERLKQGVSAPGE 76 56789************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 2.5E-40 | 13 | 76 | IPR006779 | DNA binding protein S1FA |
ProDom | PD019013 | 1.0E-4 | 14 | 76 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MAADKVPPNA NAGSQGFNPG LIVLLVVGGL LLTFLIGNYV LYVYAQKTIP PRKKKPISKK 60 KMKKERLKQG VSAPGE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA18904 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT134494 | 4e-73 | BT134494.1 Medicago truncatula clone JCVI-FLMt-1F14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104121.2 | 1e-27 | DNA-binding protein S1FA | ||||
Refseq | XP_024026346.1 | 1e-27 | DNA-binding protein S1FA | ||||
Swissprot | Q42337 | 3e-15 | S1FA2_ARATH; DNA-binding protein S1FA2 | ||||
TrEMBL | W9SCA3 | 3e-25 | W9SCA3_9ROSA; DNA-binding protein S1FA1 | ||||
STRING | XP_010104121.1 | 4e-26 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5409 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37120.1 | 9e-06 | S1FA-like DNA-binding protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA18904 |