PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17039
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family STAT
Protein Properties Length: 674aa    MW: 75498.3 Da    PI: 6.048
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17039genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT190.71.6e-591803011122
                       STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfr 84 
                                ldvvl++a+gqpv+k  ev asL+yad+g++vek++d+eapLL s+dG+efss++rp+k+l Grasfkl+isqLsskcdnrLf 
  Tp57577_TGAC_v2_mRNA17039 180 LDVVLSDAFGQPVDKGDEVFASLVYADTGAPVEKTSDDEAPLLCSCDGIEFSSSERPSKFLLGRASFKLRISQLSSKCDNRLFL 263
                                8*********************************************************************************** PP

                       STAT  85 ikfeipklkkypfleavskpirCisrsrntrsssltkk 122
                                i+f++pkl +ypfl++ ++pirCisrsrnt+ s+l++k
  Tp57577_TGAC_v2_mRNA17039 264 IRFCVPKLGNYPFLQTNTRPIRCISRSRNTKLSTLVWK 301
                                *******************************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF555504.07E-8571637IPR000980SH2 domain
Gene3DG3DSA:3.30.505.101.5E-6572637IPR000980SH2 domain
PROSITE profilePS5000110.434575673IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MNSTTFPAII LHQIHSDISE SGPFLVINDN KRINVLPVLY LHQEAPVTWT GPWTEVPHVT  60
VDFEFPLEKW VHVGCEVCPD YIRLQINGDI VGEKSLSESN SRNLKELHLA NRCGDISGVQ  120
GYVHNYEGFH TVSSIKDHHL KDPPLKLSID ESSVSEVEVE SDGVWGIVGG KASCRRNFSL  180
DVVLSDAFGQ PVDKGDEVFA SLVYADTGAP VEKTSDDEAP LLCSCDGIEF SSSERPSKFL  240
LGRASFKLRI SQLSSKCDNR LFLIRFCVPK LGNYPFLQTN TRPIRCISRS RNTKLSTLVW  300
KKSTYALQRL NLSQSSTIGD VSLEHVNSGH VEKTNPLMKR FRVGFDKISV SVKADTPTSK  360
QSGVECNSHV WPANQVDKGF PTSLDGRSLN VEESDDAPSE SSESIGERSP PSNSMECRRY  420
PISDMTIFKY CLAGLAERSQ MLKEIATSAS DKEISELAHH VSHYSGCSHL GNQILIAKRL  480
IEDGTNLWLA MSPSNHPVPW ESAAYEIEEQ FMKIASCGSR SLSHQDFEIL RRIAGCQEYL  540
TQENFEKLWC WLYPVACVIS RDWINPIWDS ISPKWIEGFI TKEEAEASLQ GPTGFQEPGT  600
FILRFPTSRS WPHPDAGSLI VTYVGNDYKL RHRLISTDHL YGSDNQRIDV KPLQDMLLAE  660
PELSRLGRIM RIY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17039
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445477.20.0SH2 domain-containing protein A
TrEMBLA0A396GKW50.0A0A396GKW5_MEDTR; Putative transcription factor STAT family
STRINGXP_004513787.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67103036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B