PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g34000
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family SRS
Protein Properties Length: 314aa    MW: 33802.8 Da    PI: 6.6377
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g34000genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.71.6e-68882432154
     DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklssaes 96 
                rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s     +      ++ +kr+r+   ++   +ss++l+s ++
  Tp7g34000  88 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSgsgggGSSIPKRHRD---TTFPGTSSSHLPSDSA 184
                67899*****************************************************99988777677666777777776...577788889999999* PP

     DUF702  97 kkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                  e+  +s+P+evss+a+frcv++s+vdd g+ ++aYqt+v+igGh+fkGiLydqG+e+
  Tp7g34000 185 GLEMGEASFPREVSSDALFRCVKMSGVDDgGDGQYAYQTTVNIGGHLFKGILYDQGPES 243
                *****************************8899************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-6291242IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.1E-2793135IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.0E-28193241IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAGIFSLGGN NNNRDEEEEE NQQQQKTNWV WYRSNTNTNN INPSSSLWQI PPEQQMLMHH  60
HQPHPQQQSL DLYPDHQIDV SDLATSSRSI TISCRDCGNQ AKKDCTHMRC RTCCKSRGFD  120
CSTHVRSTWI PVARRRERQQ QLHMSTSGGG GGSGSGGGGS SIPKRHRDTT FPGTSSSHLP  180
SDSAGLEMGE ASFPREVSSD ALFRCVKMSG VDDGGDGQYA YQTTVNIGGH LFKGILYDQG  240
PESSYMSGGS GGSDHQSSSA GGGNPFNAPA MAEGGGGGSS AMFVDPNSGG YYSSNMTAMF  300
VPPGTQFYQN PPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g34000
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052650.0GU205265.1 Brassica rapa subsp. pekinensis stylish 2b (STY2b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412014.11e-171protein SHI RELATED SEQUENCE 2
SwissprotO655171e-157SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLV4ME111e-169V4ME11_EUTSA; Uncharacterized protein
STRINGXP_006412014.11e-170(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136481727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.11e-124Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]