PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g13470
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CO-like
Protein Properties Length: 272aa    MW: 30447.4 Da    PI: 7.2884
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g13470genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.84.4e-08445540
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               +C+ ++ +++  +C++++  lC +C ++ H+       Ht++
  Tp7g13470  4 RCDYCGAEQALVYCKSDSAKLCLNCDVSVHSAnplslrHTRS 45
               8******99*********************668888888875 PP
2CCT59.61.1e-20219262144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R+ a+ RYk+K+++R F K irY+sRKa+A++R+RvKGrFvk+ 
  Tp7g13470 219 RDDAKDRYKQKKSKRMFGKLIRYASRKARADTRKRVKGRFVKSG 262
                88999*************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-12147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.025147IPR000315B-box-type zinc finger
CDDcd000212.69E-8447No hitNo description
PfamPF006431.2E-6445IPR000315B-box-type zinc finger
PfamPF062034.1E-16219261IPR010402CCT domain
PROSITE profilePS5101713.959219261IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGARCDYCGA EQALVYCKSD SAKLCLNCDV SVHSANPLSL RHTRSLLCDK CFSQPALVHC  60
LSEKVSLCQG CHWTASNCSG LGHMIQNLKL YSGCPSSADY AKIWYSILEP SISNSVPPFD  120
DCTKMKEFED WDGCSSLDHT KCYQYNEDSL EEEKNIGLPS LNLPALSGNV VPSLSVSMSN  180
LRGETSPAYN QDYEISPGFL IEDSPWESNL EVSLSPKSRD DAKDRYKQKK SKRMFGKLIR  240
YASRKARADT RKRVKGRFVK SGETFEYDPI CH
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g13470
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004815.11e-132putative zinc finger protein CONSTANS-LIKE 11
SwissprotO233791e-111COL11_ARATH; Putative zinc finger protein CONSTANS-LIKE 11
TrEMBLV4MRZ41e-131V4MRZ4_EUTSA; Uncharacterized protein
STRINGXP_006414550.11e-131(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15250.11e-113B-box type zinc finger protein with CCT domain