PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g40690
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 317aa    MW: 37539.9 Da    PI: 6.5269
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g40690genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.35.7e-2547129186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+ +e+++L+ +r+e+++++ ++k++k lWe v++km+++gf rs++qCk+kw+nl +ryk+++++e +     ++++p++++++
  Tp6g40690  47 QWSIEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARSAEQCKSKWKNLVTRYKACETTEPEA---IRQQFPFYNEIQ 129
                7********************************************************************85...56689***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.13E-2146108No hitNo description
PfamPF138371.2E-2047131No hitNo description
Gene3DG3DSA:1.10.10.604.5E-447103IPR009057Homeodomain-like
PROSITE profilePS500908.03748104IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDRRNPFHHH QQLHHLIQQQ QLHPPPQSTA AAMDPGGGGG GGERIPQWSI EETKELLGIR  60
EELDQTFMET KRNKLLWEVV AAKMADKGFA RSAEQCKSKW KNLVTRYKAC ETTEPEAIRQ  120
QFPFYNEIQS IFTARMQRML WSAEPSTSSK RKHHQFSSDE EEEEEDVEEP NQDINEELLS  180
FVETHKKEAE VVTTSTSTNP RKRAKKGKGI TGSTKAETAG SRLKEMLEDF MRQTVKMEKE  240
WRDAWEMKER EREKKEKEWR RRMAELEEER AATERRWMER EDERRLREEA RAHKRDTLID  300
VLLNKLNRDH DDDHQGF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g40690
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2716770.0AY271677.1 Arabidopsis thaliana transcription factor GT-3a (GT3A) mRNA, complete cds.
GenBankBT0289260.0BT028926.1 Arabidopsis thaliana At5g01380 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475903.11e-159PREDICTED: trihelix transcription factor GT-3a-like
SwissprotQ9SDW01e-150TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A398A5Y01e-155A0A398A5Y0_BRACM; Uncharacterized protein
STRINGBo3g001460.11e-156(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-134Trihelix family protein