PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g02550
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 415aa    MW: 46000.4 Da    PI: 5.3265
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g02550genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1521.5e-16223276356
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                ++k+ rr+ +NRe+ArrsR+RK++++  Le+ v eL++e ++L k+l++++ ++
  Tp6g02550 223 DVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNELKGEHSSLLKQLSNMNHKY 276
                789*****************************************8888887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.8E-20221285IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.208223277IPR004827Basic-leucine zipper domain
PfamPF001709.6E-15223277IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.01E-12224275No hitNo description
Gene3DG3DSA:1.20.5.1709.0E-13225275No hitNo description
PROSITE patternPS000360228243IPR004827Basic-leucine zipper domain
PfamPF124982.1E-13292383IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MNSIFSIDDF SDPFWEAPPS LNSDSAKVTT AEEVSQSQPE WTFEMFLEEI SSSVSSEPVG  60
NNNNNPIVGV SSAQSLPSVS GQNDFEDDSR YRRDHRDRDS GNRDSAPPLS STVIVDSDDY  120
HHVLKNRLET ECATAVALRA GSVKPEESTS SLETQFQPGQ SSPLTQGSLM TPGEVGVSSS  180
LPAEMKKAGV PMKQVTSGSS REYSDDEDLD EENETTGSLK PEDVKKSRRM LSNRESARRS  240
RRRKQEQTSD LETQVNELKG EHSSLLKQLS NMNHKYDDAA VGNRILKADI ETLRAKVKMA  300
EETVKRVTGT NPMLLRRSNG HNNNNRMPLT GNNRMDSSCI PAFQPQSNLN HLLNPNIGVP  360
PILHSRIGND FIPPPSLNSH TNSHLQRIRN TQNHYVAPSA NPYGWTTEPQ NDSAW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237244RRSRRRKQ
2239244SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters. Binds to the 5'-ACGT-3' motif of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. Involved in the defense responses to the biotrophic pathogen Hyaloperonospora parasitica and oxidative stress responses; mediates positively cell death (PubMed:12657652, PubMed:16957775, PubMed:19261733, PubMed:19531597). Promotes BZIP53-mediated response to hypoosmolarity stress that leads to POX1/PRODH1 accumulation (PubMed:16810321). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:16810321, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g02550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535460.0AK353546.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-51-H19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396478.10.0basic leucine zipper 10
SwissprotO227630.0BZP10_ARATH; Basic leucine zipper 10
TrEMBLE4MYE90.0E4MYE9_EUTHA; mRNA, clone: RTFL01-51-H19
TrEMBLV4MZ690.0V4MZ69_EUTSA; Uncharacterized protein
STRINGBostr.2983s0195.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148711720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02640.20.0bZIP family protein
Publications ? help Back to Top
  1. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]