PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g02470

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HB-other

Protein Properties

Length: 935aa MW: 103673 Da PI: 9.5485

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g02470	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.9	5.5e-06	67	123	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ L+++F+ + +s++e +e+++ g++ +qV+ +F ++++ ++ Tp6g02470 67 KRPRDLLNPKAVKYLQAVFAIKDSISKTESREISALFGISVAQVRDFFVTQKTRVRR 123 799*********************************************999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.491	64	124	IPR001356	Homeobox domain
SMART	SM00389	2.0E-4	66	128	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.15E-5	67	128	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.4E-4	67	126	IPR009057	Homeodomain-like
CDD	cd00086	6.35E-4	67	124	No hit	No description
Gene3D	G3DSA:1.20.930.10	5.2E-5	230	320	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	1.41E-5	232	316	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 935 aa Download sequence Send to blast
MDDAFKEEIE IGSSVESLME LLDSQKDIFH SQIDQLQDVV VTQCKLTGVN PLAQEMAAGA 60 LSIKIGKRPR DLLNPKAVKY LQAVFAIKDS ISKTESREIS ALFGISVAQV RDFFVTQKTR 120 VRRQVRLSRE KVICSSTLAI QGDDVPEKNN AVPHADPVPL NSMDPKASSI SWGEGETVAL 180 MPKEDIPPDI SDSDKYFVEN IFSLLRKEET FLGQVKLMEW IMQIQDSSVL IWFLSKGGVL 240 ILTTWLSQAA SEEQTSVLLL ILKVLCHLPL HKASPENMSA ILQSVNGLRF YRTSDISNRA 300 KGLLSRWTKL FAKIQAMKKQ NRNISQIDSQ SQLLLKQSIA EIMGDSSNPE DILSISNGRS 360 ENGRRFKLSQ GPKLLITSAD DSTRKHVLGS TPSYNKERRK VQMVEQPGQK AAGRSPQTVR 420 IGTSSQSRPM SADDIQKAKM RALYMHSKNS KKDPLPSAIG DTKTIVPEKP LALQSAKDSP 480 PSQNSEAKAE DTPEPSAVQP VNSLAVNLPV QAINSPAVNV PAQPVNSPAV NVPVQACEFR 540 KLSTPPKRIS SNVVVLLKMS PQTILKNCKR KQIDWHVPPG MALDELWRVA AGGNSKEADV 600 QKNRNRREKE TTYQSLQTIP LNPKEPWDRE MDFDDSLTPE IPSQQPPEES ITEPHDSLDE 660 RRTTAGAATT SSSQSSSVEP DFELLAALLK NPDLLYALTS GKPSNLASQD MVKLLDVIKT 720 GAPNSSSSLY KKVEEKVEVS LPSPTPSSNP GMSGWGEGVI RNPFSRQNQV GAAVARMSTQ 780 LPAASMQWQS SNEQLIPRHA LSAYNSLTLP HTERQHQHQT MQPRLHQSHQ QQPILTTSYG 840 VRESVGQMGI AASASWRSQQ SQNSYYTHQA NGIGPASYQV NDQYMSSNPG FESWSPDRSP 900 TRNHPNMRGQ QQQQQPSRKH DSSSHPYWNQ NKRWR

Sequence ? help Back to Top

Protein Sequence Length: 935 aa Download sequence Send to blast

MDDAFKEEIE IGSSVESLME LLDSQKDIFH SQIDQLQDVV VTQCKLTGVN PLAQEMAAGA  60
LSIKIGKRPR DLLNPKAVKY LQAVFAIKDS ISKTESREIS ALFGISVAQV RDFFVTQKTR  120
VRRQVRLSRE KVICSSTLAI QGDDVPEKNN AVPHADPVPL NSMDPKASSI SWGEGETVAL  180
MPKEDIPPDI SDSDKYFVEN IFSLLRKEET FLGQVKLMEW IMQIQDSSVL IWFLSKGGVL  240
ILTTWLSQAA SEEQTSVLLL ILKVLCHLPL HKASPENMSA ILQSVNGLRF YRTSDISNRA  300
KGLLSRWTKL FAKIQAMKKQ NRNISQIDSQ SQLLLKQSIA EIMGDSSNPE DILSISNGRS  360
ENGRRFKLSQ GPKLLITSAD DSTRKHVLGS TPSYNKERRK VQMVEQPGQK AAGRSPQTVR  420
IGTSSQSRPM SADDIQKAKM RALYMHSKNS KKDPLPSAIG DTKTIVPEKP LALQSAKDSP  480
PSQNSEAKAE DTPEPSAVQP VNSLAVNLPV QAINSPAVNV PAQPVNSPAV NVPVQACEFR  540
KLSTPPKRIS SNVVVLLKMS PQTILKNCKR KQIDWHVPPG MALDELWRVA AGGNSKEADV  600
QKNRNRREKE TTYQSLQTIP LNPKEPWDRE MDFDDSLTPE IPSQQPPEES ITEPHDSLDE  660
RRTTAGAATT SSSQSSSVEP DFELLAALLK NPDLLYALTS GKPSNLASQD MVKLLDVIKT  720
GAPNSSSSLY KKVEEKVEVS LPSPTPSSNP GMSGWGEGVI RNPFSRQNQV GAAVARMSTQ  780
LPAASMQWQS SNEQLIPRHA LSAYNSLTLP HTERQHQHQT MQPRLHQSHQ QQPILTTSYG  840
VRESVGQMGI AASASWRSQQ SQNSYYTHQA NGIGPASYQV NDQYMSSNPG FESWSPDRSP  900
TRNHPNMRGQ QQQQQPSRKH DSSSHPYWNQ NKRWR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g02470

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226746	0.0	AK226746.1 Arabidopsis thaliana mRNA for luminidependens protein, complete cds, clone: RAFL07-75-C15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006396467.1	0.0	homeobox protein LUMINIDEPENDENS
Refseq	XP_018471086.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS isoform X1
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	V4KJ89	0.0	V4KJ89_EUTSA; Uncharacterized protein
STRING	XP_006396467.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]