PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g30650

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

SRS

Protein Properties

Length: 345aa MW: 38236.7 Da PI: 7.052

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g30650	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	226.8	4e-70	115	281	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel.........kskkqsalsstk 90 r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s+ ++a++kr re +s ++ +t+ Tp5g30650 115 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRetQNANAKRLREAnggdnddkdHSGGGGSALATR 214 7899*****************************************************99999885544445555555677776655667778899999 PP DUF702 91 lssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 +++a+s++ le+s+ lP+evss+avfrcvrvss+++ +++e+aYqtav+igGhvfkGiLydqG+++ Tp5g30650 215 VVNANSNSGLEVSQnLPPEVSSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 281 ***99998776***************98535567*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.0E-64	118	280	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.1E-28	120	162	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.1E-26	230	279	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MAGFFYLGGR DNNNKQDHQQ VDKNHHHQDK SNYLYLYKDE IYNTNKGFEI WPPQYFQQQQ 60 QQQQQQQHVT APANFYSFGM VPSGSSSNNN NNNRSRSLYF NVVSDHEPGG FTVTRQGGMN 120 CQDCGNQAKK DCPHMRCRTC CKSRGFHCQT HVKSTWVPAA KRRERLAQLA SLQHHSASSR 180 ETQNANAKRL REANGGDNDD KDHSGGGGSA LATRVVNANS NSGLEVSQNL PPEVSSPAVF 240 RCVRVSSIEE DEDDQEYAYQ TAVNIGGHVF KGILYDQGPD QDHHQQLNLL APTATTTDAE 300 ETAAKTAVTV AGNNNNGLIL DPSSLYPAQL NSFIAGTPFF TPPRS

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MAGFFYLGGR DNNNKQDHQQ VDKNHHHQDK SNYLYLYKDE IYNTNKGFEI WPPQYFQQQQ  60
QQQQQQQHVT APANFYSFGM VPSGSSSNNN NNNRSRSLYF NVVSDHEPGG FTVTRQGGMN  120
CQDCGNQAKK DCPHMRCRTC CKSRGFHCQT HVKSTWVPAA KRRERLAQLA SLQHHSASSR  180
ETQNANAKRL REANGGDNDD KDHSGGGGSA LATRVVNANS NSGLEVSQNL PPEVSSPAVF  240
RCVRVSSIEE DEDDQEYAYQ TAVNIGGHVF KGILYDQGPD QDHHQQLNLL APTATTTDAE  300
ETAAKTAVTV AGNNNNGLIL DPSSLYPAQL NSFIAGTPFF TPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g30650

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU205267	0.0	GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006390296.2	0.0	protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	0.0	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A078IBM8	0.0	A0A078IBM8_BRANA; BnaAnng09150D protein
STRING	fgenesh2_kg.2__1830__AT1G75520.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	0.0	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]