PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g23910
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TCP
Protein Properties Length: 357aa    MW: 40116.9 Da    PI: 8.6935
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g23910genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP142.62.9e-441082383135
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa.kskksq 101
                +k+drhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k++ik+  +t + s      +      ++ + +++a++++ k +k++
  Tp5g23910 108 KKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLISKSKASIKQVKETVAASG--G-GGGGGGDYEHLHVNEKANDETlKVSKRR 204
                699************************************************************33333..1.1222222223333455566665999999 PP

        TCP 102 ksaasalnlakesrakarararertrekmriknk 135
                +++ +++ ++kesr+kar+rarert  km+++++
  Tp5g23910 205 TKTVENSCKKKESREKARERARERTMTKMKMRSS 238
                99999999999********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-34108170IPR005333Transcription factor, TCP
PROSITE profilePS5136935.387109167IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.195215232IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MFPSIDTNGY ELFEPFNPHQ ATMLPSFTTH IQSPISHHHH PLPSFAFSSD FLDESVLISQ  60
FLLQQQDEAA DVVDSPIKLC KKLEQEKNDV KCVNGTTSEK VSRRRTGKKR DRHSKICTAQ  120
GPRDRRMRLS LQIARKFFDL QDMLGFDKAS KTIEWLISKS KASIKQVKET VAASGGGGGG  180
GGDYEHLHVN EKANDETLKV SKRRTKTVEN SCKKKESREK ARERARERTM TKMKMRSSGL  240
IDTSKTFSDP NQESRKIKIT GGGAQFEGGN QEQEWSTTNA NMAEYQMDSV SIVEKFLGIT  300
SDSRSSSIFG DSEESNTSLS SIRGMVIPRE HNTTSTASVD EERNPTSSFS LYDYLCY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197203LKVSKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g23910
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391095.10.0transcription factor TCP12 isoform X1
SwissprotA0AQW41e-166TCP12_ARATH; Transcription factor TCP12
TrEMBLV4MB030.0V4MB03_EUTSA; Uncharacterized protein
STRINGXP_006391095.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-140TCP domain protein 12