PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g20540
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 290aa    MW: 34843.2 Da    PI: 7.8134
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g20540genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.49.5e-2444126186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+ +e+++Li++r e+++++ ++k++k lWe +s+kmr++ f rs++qCk+kw+nl +r+k  +++e +    +++++p++d+++
  Tp4g20540  44 QWSVEETKELIAIRGELDQTFMETKRNKLLWEVISNKMRDKSFLRSSEQCKCKWKNLVTRFKGWETMEAET---ARQQFPFYDHMQ 126
                7********************************************************************84...56679*****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.1E-441103IPR001005SANT/Myb domain
CDDcd122031.76E-2243106No hitNo description
PfamPF138371.7E-1844126No hitNo description
PROSITE profilePS500907.66645101IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDGHQHHLHQ LQYLNKHHQH LHPQSQTPEI ASPAAAASGD RFPQWSVEET KELIAIRGEL  60
DQTFMETKRN KLLWEVISNK MRDKSFLRSS EQCKCKWKNL VTRFKGWETM EAETARQQFP  120
FYDHMQIIFT SRMQRIMWAE SEGATRKRSH SEQFSSDEEE ENVNEELEDI SNDPKTLKPK  180
KNIAKIKRKG GISSSSANNG VREVLDEFMR HQMRMENEWR ERWETKEKER AEKEEEWRKK  240
MEELEKERVA MERMWRDREE QRRSREEMRA EKRDSLINAL LAKLTRDGSL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g20540
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133240.11e-160PREDICTED: trihelix transcription factor GT-3b-like
RefseqXP_013740623.11e-160trihelix transcription factor GT-3b-like
SwissprotO804501e-121TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A078F0351e-159A0A078F035_BRANA; BnaA03g17660D protein
TrEMBLA0A397ZXI21e-159A0A397ZXI2_BRACM; Uncharacterized protein
STRINGBra000046.1-P1e-159(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.13e-80Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]