PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g19850
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CO-like
Protein Properties Length: 388aa    MW: 42823.5 Da    PI: 5.7505
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g19850genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.21.2e-06245340
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               e+kC+ +   ++ ++C+++   lC +C ++ H+       Ht++
  Tp3g19850  2 EPKCDYCVAAQAVIYCKSDLAKLCLNCDVHVHSAnplsrrHTRS 45
               689******99*********************667888889876 PP
2CCT61.13.5e-21331374144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R +a+lRY+eK+ +R F K+irY+sRKa+A++R+RvKGrFvk+ 
  Tp3g19850 331 RIRAMLRYREKKLKRSFGKQIRYASRKARADTRKRVKGRFVKAG 374
                6689*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.603147IPR000315B-box-type zinc finger
SMARTSM003362.7E-10147IPR000315B-box-type zinc finger
CDDcd000212.53E-6347No hitNo description
PROSITE profilePS5101714.584331373IPR010402CCT domain
PfamPF062032.7E-15331373IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEPKCDYCVA AQAVIYCKSD LAKLCLNCDV HVHSANPLSR RHTRSLICEK CFSQPGIIRC  60
LDENVSFCQG CNWHTSNCFS LGHRLQNVNL FSGCPSKTEF VRMWSSILEP SVPGLVDPFV  120
GSLPLDDPNN AMFGMGKINE IDGLIGSSYS LTSHNISSTN VSDELFSVDS KGCPDLVLKL  180
EEGEEDLCEG LNLDDAPLNF DVGDDIIECS PQEHIESDHA VPLPNRLLIY KNNISVTIDN  240
ALDESSPPGK QDCTSIHQSG PLQMNVNTGL PLLASPILLG QIHPTMSLTI SNITGHESKA  300
VDYQDCGVSP GFIMSDSPWE SNLEAKCPQA RIRAMLRYRE KKLKRSFGKQ IRYASRKARA  360
DTRKRVKGRF VKAGDTYDYD PSSPPTDH
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g19850
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406230.20.0zinc finger protein CONSTANS-LIKE 12
SwissprotQ9LJ440.0COL12_ARATH; Zinc finger protein CONSTANS-LIKE 12
TrEMBLV4M5W20.0V4M5W2_EUTSA; Uncharacterized protein
STRINGXP_006406230.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-171B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]