PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g22520
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CO-like
Protein Properties Length: 353aa    MW: 38264.4 Da    PI: 5.453
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g22520genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.6e-07436436
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
               + C+ +++  ++l+C+ +  +lC +C ++ H  
  Tp2g22520  4 KLCDSCKSATASLYCRPDAAFLCLSCDSKVHAA 36
               58***************************9954 PP
2zf-B_box27.56.7e-094691342
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Tp2g22520 46 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
               689*****************************66899999*99986 PP
3CCT705.9e-24286329144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Tp2g22520 286 REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 329
                9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.566148IPR000315B-box-type zinc finger
SMARTSM003362.9E-13148IPR000315B-box-type zinc finger
PfamPF006431.6E-5443IPR000315B-box-type zinc finger
CDDcd000214.43E-9548No hitNo description
PROSITE profilePS5011910.8934491IPR000315B-box-type zinc finger
PfamPF006433.3E-74691IPR000315B-box-type zinc finger
CDDcd000211.53E-94791No hitNo description
SMARTSM003361.3E-104991IPR000315B-box-type zinc finger
PfamPF062036.8E-18286328IPR010402CCT domain
PROSITE profilePS5101716.767286328IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MASKLCDSCK SATASLYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSG ADGSAKHTAV NFLDDCYFSD  120
LDGNASREEE EEEAASWLLP NPKTTAQATA AEAVPGDSPE MNTGQQYLFS DPDPYLDLDY  180
GTVDPKLESQ EQNSSGTDGV VPVENRTVRV PTVNENCYEL DFTGGSKGFT YGYNCISHSV  240
SSSSLEVGVV PDGGSVADVS YPYGGPASSG TDPGTQRAVP LTSAEREARV MRYREKRKNR  300
KFEKTIRYAS RKAYAEMRPR IKGRFAKRTD TSESNDVVGH GGIFSGFGLV PTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g22520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526610.0AK352661.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394745.20.0LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T90.0COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A1J3JTP10.0A0A1J3JTP1_NOCCA; Zinc finger protein CONSTANS-LIKE 4
STRINGA0A087GD110.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.10.0CONSTANS-like 4