PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g09000

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HB-other

Protein Properties

Length: 1698aa MW: 191248 Da PI: 5.1057

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g09000	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.4e-18	20	76	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t+ qle+Le+ ++ ++yps++ r++L+ kl+L++rq ++WF+ rR k++k Tp2g09000 20 KSKRKMKTAAQLEVLENTYAAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKDRK 76 679****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-17	4	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-15	15	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.406	17	77	IPR001356	Homeobox domain
SMART	SM00389	1.1E-16	19	81	IPR001356	Homeobox domain
Pfam	PF00046	8.6E-16	20	76	IPR001356	Homeobox domain
CDD	cd00086	8.31E-14	20	78	No hit	No description
PROSITE profile	PS50827	16.346	531	590	IPR018501	DDT domain
SMART	SM00571	5.5E-23	531	590	IPR018501	DDT domain
Pfam	PF02791	1.2E-16	532	587	IPR018501	DDT domain
Pfam	PF05066	3.1E-16	713	781	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.4E-7	916	956	IPR028942	WHIM1 domain
Pfam	PF15613	1.1E-12	1089	1161	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1698 aa Download sequence Send to blast
MEGGSEAEKN KTPEGASESK SKRKMKTAAQ LEVLENTYAA EPYPSEAIRA DLSVKLNLSD 60 RQLQMWFCHR RLKDRKSSTP SKRQRKESTP TAVESSKQAV NAGDLVAGNE HNLFGHELDS 120 RRTARGAGGN GGVTVVRRFN EPSPAEFRAI GYVEAQLGER LRDNGPILGM EFDPLPPGAF 180 GMPIEMPSHR KATRAALETK LYVRSDVKPV KDSVRTIREY QFLPEQPSSR TDHSERVSPS 240 HHYGVPFDAS VLRASSVSAG HRDDYKISPQ IPNLNLSTHQ GKPGHVYSPN LGEYDSPYQK 300 SHVDPAMHGN LNHHPIHEDP FVKSEREIGN DDDDYDDVLQ LERKRKSEEA RISREVEAHE 360 KRIRKELERQ DMLRRKREEQ MRKEMERQDR ERRKEEERLL RERQREEERY LKEQMREMQR 420 REKFLKKETI RAEKIRQKEE MRREKEVARL KAANERAIAR KIAKESMELI EDERLELMEV 480 AALTQGLPSM LALDFETLQN LDSYREKQAI FPPTSIKLKK PFAVKPWNGS DENVANLLMV 540 WRFLITFADV LGLWPFTLDE FTQAFHDYDP RLMGEIHIVL LKTIVKDIEG VARTLSIGIG 600 ANQNAAANPG GGHPHVVEGA YAWGFDIRSW RRNLNVFTWP EILRQVALSA GLGPRLKKAD 660 IKTVSIHDDN EANNSENVIF NLRVGVAAEN AFAKMQERGL SNPRRSRHRL TPGTVKFAAF 720 HVLSLEGEKG LTILEVAEKI QKSGLRDLTT SRTPEASVAA ALSRDTKLFE RVAPSTYCVR 780 ASYRKYSGDA ETIFAEARER IRMFKSGVTD VEDVDDAERD EDSESDVGDD TEVDLTLKKE 840 DSDTLEIDNL TGVEPVLENG KLDSMTMKTE LGLPLTPSLP GDTKDEKIDD ILPDQSLEDV 900 VANDEDSACF DVSKLGEQWV QGLVEGDYSN LSIEERLNAL VALIGIAIEG NTIRMALEER 960 LEVASALKKQ MWSEVQLDKR WKEESLIRAN YLSYPTPKLG INIATAASGN QESPSVDVTP 1020 ISSQDQLSLP QIDVNNVAGS SLQLQENVSG MENLQYQQQQ QGYTADRERL RAQLKAYVGY 1080 KAEELYVYRS LPLGQDRRRN RYWRFSASTS WNDPGCGRIF VELQDGRWRL IDSEEGFDYL 1140 VKSLDVRGVR ESHLHFMLLK IEASFKEAVR RNVETNHELC SISTGLDLDS DTAEISTTFK 1200 IDLGDSDSIE RCGVLQRFQS FEKWMWDSML HPGALSAFKY GAKKSIPLFH ICRSCAELHF 1260 VEDICCPGCG QMCGGLDVAE LCFAEQVAQL GKISGGDTGF ILRGSILSPL RIRLLKIQLA 1320 LLEASLPPEG LQAFWTENLR KAWGLKLLSS SSPEELHQVL TTLEVALKRD FLSSNFETTS 1380 ELLDLPEEAL ASDFTSAVNV LPWIPKTTGG VALRLFEFDS SIAYTPDQNN DPQKDKESED 1440 FVGLETKFLR NVQENDVIEA TPVQVAYTQE ENWTEPGLGG VSSSGRGRPP RGRGRPRSRG 1500 KKPSSASGRP PRGAANSNGE SMLKPRAQPR GGRKNGRRRA SRTRPTKGTL GISNEVEGGG 1560 RRAKEVNVTA KAALRDNEDW IETPELQEDD GEASSSGRSF QYKDYDDVMA PIDDFDGVHE 1620 SSKLVGRGEF SLHSDDEYED EEENMITKME VNVDDEDEDY INEDSDGREQ PEISIDAGRK 1680 RFPFEDPDLT SSSSSDFQ

Sequence ? help Back to Top

Protein Sequence Length: 1698 aa Download sequence Send to blast

MEGGSEAEKN KTPEGASESK SKRKMKTAAQ LEVLENTYAA EPYPSEAIRA DLSVKLNLSD  60
RQLQMWFCHR RLKDRKSSTP SKRQRKESTP TAVESSKQAV NAGDLVAGNE HNLFGHELDS  120
RRTARGAGGN GGVTVVRRFN EPSPAEFRAI GYVEAQLGER LRDNGPILGM EFDPLPPGAF  180
GMPIEMPSHR KATRAALETK LYVRSDVKPV KDSVRTIREY QFLPEQPSSR TDHSERVSPS  240
HHYGVPFDAS VLRASSVSAG HRDDYKISPQ IPNLNLSTHQ GKPGHVYSPN LGEYDSPYQK  300
SHVDPAMHGN LNHHPIHEDP FVKSEREIGN DDDDYDDVLQ LERKRKSEEA RISREVEAHE  360
KRIRKELERQ DMLRRKREEQ MRKEMERQDR ERRKEEERLL RERQREEERY LKEQMREMQR  420
REKFLKKETI RAEKIRQKEE MRREKEVARL KAANERAIAR KIAKESMELI EDERLELMEV  480
AALTQGLPSM LALDFETLQN LDSYREKQAI FPPTSIKLKK PFAVKPWNGS DENVANLLMV  540
WRFLITFADV LGLWPFTLDE FTQAFHDYDP RLMGEIHIVL LKTIVKDIEG VARTLSIGIG  600
ANQNAAANPG GGHPHVVEGA YAWGFDIRSW RRNLNVFTWP EILRQVALSA GLGPRLKKAD  660
IKTVSIHDDN EANNSENVIF NLRVGVAAEN AFAKMQERGL SNPRRSRHRL TPGTVKFAAF  720
HVLSLEGEKG LTILEVAEKI QKSGLRDLTT SRTPEASVAA ALSRDTKLFE RVAPSTYCVR  780
ASYRKYSGDA ETIFAEARER IRMFKSGVTD VEDVDDAERD EDSESDVGDD TEVDLTLKKE  840
DSDTLEIDNL TGVEPVLENG KLDSMTMKTE LGLPLTPSLP GDTKDEKIDD ILPDQSLEDV  900
VANDEDSACF DVSKLGEQWV QGLVEGDYSN LSIEERLNAL VALIGIAIEG NTIRMALEER  960
LEVASALKKQ MWSEVQLDKR WKEESLIRAN YLSYPTPKLG INIATAASGN QESPSVDVTP  1020
ISSQDQLSLP QIDVNNVAGS SLQLQENVSG MENLQYQQQQ QGYTADRERL RAQLKAYVGY  1080
KAEELYVYRS LPLGQDRRRN RYWRFSASTS WNDPGCGRIF VELQDGRWRL IDSEEGFDYL  1140
VKSLDVRGVR ESHLHFMLLK IEASFKEAVR RNVETNHELC SISTGLDLDS DTAEISTTFK  1200
IDLGDSDSIE RCGVLQRFQS FEKWMWDSML HPGALSAFKY GAKKSIPLFH ICRSCAELHF  1260
VEDICCPGCG QMCGGLDVAE LCFAEQVAQL GKISGGDTGF ILRGSILSPL RIRLLKIQLA  1320
LLEASLPPEG LQAFWTENLR KAWGLKLLSS SSPEELHQVL TTLEVALKRD FLSSNFETTS  1380
ELLDLPEEAL ASDFTSAVNV LPWIPKTTGG VALRLFEFDS SIAYTPDQNN DPQKDKESED  1440
FVGLETKFLR NVQENDVIEA TPVQVAYTQE ENWTEPGLGG VSSSGRGRPP RGRGRPRSRG  1500
KKPSSASGRP PRGAANSNGE SMLKPRAQPR GGRKNGRRRA SRTRPTKGTL GISNEVEGGG  1560
RRAKEVNVTA KAALRDNEDW IETPELQEDD GEASSSGRSF QYKDYDDVMA PIDDFDGVHE  1620
SSKLVGRGEF SLHSDDEYED EEENMITKME VNVDDEDEDY INEDSDGREQ PEISIDAGRK  1680
RFPFEDPDLT SSSSSDFQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g09000

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020882322.1	0.0	homeobox-DDT domain protein RLT2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A178UEB6	0.0	A0A178UEB6_ARATH; RLT2
STRING	Bostr.3148s0041.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9601	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator