PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g01630
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 263aa    MW: 29453.7 Da    PI: 8.2653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g01630genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-1273125155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                ++++h  +Er+RR ++ s f +Lr+llP       ++K   a+ + +Av+YIk+Lq
  Tp2g01630  73 KKMKHRDIERQRRLEVSSLFKTLRSLLPFqY---IQGKRATADHVFEAVNYIKDLQ 125
                6899*************************66...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.28E-1270129No hitNo description
SuperFamilySSF474591.13E-1471146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.20872124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1073140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-1073125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-478130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDFVPSMFMP DSTDESGLLF SDSFGLSPLI SYLNQDVCNQ TADKNGVSNK KRSLCDTHGA  60
REANKGDDDR ESKKMKHRDI ERQRRLEVSS LFKTLRSLLP FQYIQGKRAT ADHVFEAVNY  120
IKDLQKKIKE LNEKRNRIEK SIPGTVTAHT STEECTSGLS SSSLSTSSLR CSCVDDKHIT  180
VMVMPCLVGI EIIISCCLGR NKSCLSSVLQ ILAQEERLSV VSCLSTRLQQ RFIHTIVSQV  240
GNGIKINISE LKDNIVNMTK KED
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g01630
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609548.11e-145PREDICTED: transcription factor bHLH125
SwissprotQ9LQ081e-128BH125_ARATH; Transcription factor bHLH125
TrEMBLA0A0D3E3T01e-143A0A0D3E3T0_BRAOL; Uncharacterized protein
STRINGBo9g028760.11e-144(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.11e-114bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]