PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g24230
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CO-like
Protein Properties Length: 401aa    MW: 44601.2 Da    PI: 7.4625
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g24230genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.96.2e-06639336
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                  C+ ++e  + lfC+ +   lC  C ++ H  
  Tp1g24230  6 RVPCDFCGERTAVLFCRADTAKLCLPCDQHVHTA 39
               678*******9******************99944 PP
2zf-B_box21.83.9e-074980334
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                ++C+++++++++  C++++  lC++C    H
  Tp1g24230 49 SQICDNCGNEPVSVRCFTDNLVLCQECDWDVH 80
               689************************98777 PP
3CCT66.29.2e-23353397145
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                R +a++RYkeKrktR+++K+irYesRKa+A++R RvKGrFvk++e
  Tp1g24230 353 RGNAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVKGRFVKASE 397
                7789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.456451IPR000315B-box-type zinc finger
SMARTSM003365.5E-13451IPR000315B-box-type zinc finger
CDDcd000218.31E-9751No hitNo description
PROSITE profilePS501198.7454794IPR000315B-box-type zinc finger
CDDcd000212.75E-85180No hitNo description
SMARTSM003360.795294IPR000315B-box-type zinc finger
PROSITE profilePS5101714.951353395IPR010402CCT domain
PfamPF062034.2E-17353395IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGSSERVPCD FCGERTAVLF CRADTAKLCL PCDQHVHTAN LLSKKHVRSQ ICDNCGNEPV  60
SVRCFTDNLV LCQECDWDVH GSCSVSEAHV RSAVEGFSGC PSALELAALW GLDLEGRKEE  120
SEVPMMMMEN FGMQLDSWVS GSNVLQELIV PVPKDTMFKK RSSSCGRYKQ VLCKQLEEEG  180
FVVPEMPKRM GWERDAEEKI NGGAEVIQQP PTTSFTSLLW NATNPSGGQS TQIWDFNLGQ  240
SREPEDTSRT KAAYVTKDAA SFTINNFVDL MNDTCSSKAK GVKEICKDDY NRSTSGQGPA  300
ASDSNNRPIT FGSEKGSNCS KDLHFTEQVG GTSCKTTRLV ATNADLELLA QNRGNAMQRY  360
KEKRKTRRYD KTIRYESRKA RADTRLRVKG RFVKASEAPY P
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g24230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415704.10.0zinc finger protein CONSTANS-LIKE 15
SwissprotQ9C7E80.0COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBLV4KVL40.0V4KVL4_EUTSA; Uncharacterized protein
STRINGXP_006415704.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]