PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554556.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 346aa    MW: 38422.8 Da    PI: 9.5689
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554556.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.4e-18120169155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  XP_010554556.1 120 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 169
                     78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-9120169IPR001471AP2/ERF domain
CDDcd000186.66E-12120179No hitNo description
SuperFamilySSF541719.81E-16120178IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-17121177IPR001471AP2/ERF domain
SMARTSM003801.7E-30121183IPR001471AP2/ERF domain
PROSITE profilePS5103217.649121177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MLDLNLGIFS SHNDREEDGR KTIAEDSLSS AAADAFIAFG ILKRDDGEIR QLFPVAGEIP  60
SDFSGDLGLS TTTTTSTTPF SINGDTSQWL NLSSSLQKIS DNNNTQVVKK SRRGPRSKSS  120
QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAYAAARAY DRAAIKFRGL DADINFDVND  180
YRADIERMKN LSKEEFVQTL RRESASFARG NSRHRGLNLN HNQWKSDPTH LHKDRALDVG  240
GMRLIKSNDL IKGEVAMKLG ANDKENDHKD LELSLGISSS SSSENKKPRT IDRYTGLDRS  300
KKDFLGEQWP KYLPVAATMK SLKTVAAASS GFPFIATMVD SSSIGS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554556.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554556.10.0PREDICTED: AP2-like ethylene-responsive transcription factor SMZ
RefseqXP_010554557.10.0PREDICTED: AP2-like ethylene-responsive transcription factor SMZ
SwissprotQ6PV671e-91SNZ_ARATH; AP2-like ethylene-responsive transcription factor SNZ
TrEMBLA0A1J3JSM58e-93A0A1J3JSM5_NOCCA; AP2-like ethylene-responsive transcription factor SMZ (Fragment)
STRINGXP_010554556.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108581832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54990.12e-73AP2 family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li W,Wang T,Zhang Y,Li Y
    Overexpression of soybean miR172c confers tolerance to water deficit and salt stress, but increases ABA sensitivity in transgenic Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(1): p. 175-94
    [PMID:26466661]
  4. Gras DE, et al.
    SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana.
    J. Exp. Bot., 2018. 69(3): p. 619-631
    [PMID:29309650]