PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548562.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CO-like
Protein Properties Length: 311aa    MW: 33622.7 Da    PI: 6.393
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548562.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box254e-08436436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    + C+ +++  ++lfC+ +  +lC  C   +H+ 
  XP_010548562.1  4 KLCDSCKSATATLFCRADTAFLCGGCDARIHSA 36
                    68*****************************65 PP
2zf-B_box284.6e-094691342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  XP_010548562.1 46 VWICEVCEQAPAHVTCKADAAALCVTCDADIHSAnplarrHERVPV 91
                    689*****************************66899999*99986 PP
3CCT68.12.3e-23250293144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae RpR+KGrF+k++
  XP_010548562.1 250 REARVLRYREKRKNRRFEKTIRYASRKAYAEMRPRIKGRFAKRT 293
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.2E-14148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.224148IPR000315B-box-type zinc finger
PfamPF006433.9E-6443IPR000315B-box-type zinc finger
CDDcd000212.45E-8548No hitNo description
PROSITE profilePS5011910.7364491IPR000315B-box-type zinc finger
PfamPF006432.2E-74691IPR000315B-box-type zinc finger
CDDcd000211.00E-94791No hitNo description
SMARTSM003362.3E-104991IPR000315B-box-type zinc finger
PfamPF062033.8E-17250292IPR010402CCT domain
PROSITE profilePS5101716.668250292IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DTAFLCGGCD ARIHSANKLA SRHARVWICE VCEQAPAHVT  60
CKADAAALCV TCDADIHSAN PLARRHERVP VTPFYDSPPA TKPPDFLDGG DDGDGDAEAA  120
SWLLPNPEKE GIENPYLFSD VEPYLDYPAV NPKMEAPENS SGADGVVPVQ NKSAQTAFFG  180
EDYFNLAFSA SKSSPHRYSC ISQTVSSSSL DVGVVPDDGS MAEIPNMHGG VANTMTETTA  240
PAVQLSSAER EARVLRYREK RKNRRFEKTI RYASRKAYAE MRPRIKGRFA KRTEAGATAG  300
ILDGFGVVPT F
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548562.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548562.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 3
SwissprotQ9SK531e-128COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLV4NJM41e-142V4NJM4_EUTSA; Uncharacterized protein
STRINGXP_010548562.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-128CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]