PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010546422.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 282aa MW: 30679.6 Da PI: 8.7068

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010546422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	13	70	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + lkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk XP_010546422.1 13 HPLKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKP 70 6789****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	1	65	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-33	14	69	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	15	69	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	17	53	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDSGRRLRPP HAHPLKCPRC ESTHTKFCYY NNYSLSQPRY FCKTCRRYWT KGGTLRNIPV 60 GGGCRKNKKP SAGKKPSSST GTATTAAAVA ATELMAPHSQ LNYENAPFGF PHFGGTMGSY 120 GQEHTGGFLE SKYGGLLQQT PRPIDFLDGK FDLMGMNSDL PMVEPGSISL THGLGINHGE 180 LHGFHGGGAG IMDITTCQRL MMTAYEHHHH HNGNDQDQNL TAMDVKPNPE LSSLDWQQGQ 240 VCPDTGKDTA SYGGYMKGLG PSWSGLMING YGPPTKKTNS LV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:19915089, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010546422.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010546422.1	0.0	PREDICTED: dof zinc finger protein DOF5.6
Swissprot	Q9FM03	2e-93	DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBL	A0A0D3E1Y0	4e-95	A0A0D3E1Y0_BRAOL; Uncharacterized protein
STRING	XP_010546422.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6374	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	1e-88	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]