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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_010546079.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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| Family | bHLH | ||||||||
| Protein Properties | Length: 268aa MW: 30097.8 Da PI: 6.7508 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 46.3 | 7.9e-15 | 78 | 130 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+r+ h +Er+RR+++ s f +Lr+llP ++K s ++ + +Av+YIk+Lq
XP_010546079.1 78 KRMRHRDVERQRRQEVSSLFKNLRSLLPLqY---VKGKRSSSDLVSEAVDYIKDLQ 130
799**************************66...9********************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 2.49E-14 | 77 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 2.67E-12 | 77 | 134 | No hit | No description |
| PROSITE profile | PS50888 | 14.684 | 77 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 2.1E-13 | 78 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 5.0E-12 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 2.2E-7 | 83 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 268 aa Download sequence Send to blast |
MDYVPSLDLI SSFFTPDLIE QDGFGFEFPD PTSVPSKLIS FRNSDISDRN TDSKDDRKRK 60 GDEISGREVE GSDERLKKRM RHRDVERQRR QEVSSLFKNL RSLLPLQYVK GKRSSSDLVS 120 EAVDYIKDLQ KRIKEFDEKK DQIKKISDGE NRASGSAAPS STEACSSSPS SSSSSCSCGG 180 EGKDIEVVIM PCLGGGVEIV ISCCFRHEFC LSSVLQVLVE EEGFNVFRCT SATLQSSRRL 240 LHNIFAQVDG GRNINFAELQ DKIMRTRR |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 77 | 89 | KRMRHRDVERQRR |
| 2 | 78 | 89 | RMRHRDVERQRR |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_010546079.1 |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010546079.1 | 0.0 | PREDICTED: transcription factor bHLH125 | ||||
| STRING | XP_010546079.1 | 0.0 | (Tarenaya hassleriana) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM6228 | 18 | 43 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G62975.1 | 3e-61 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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