PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010542862.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HB-other

Protein Properties

Length: 941aa MW: 104100 Da PI: 9.2051

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010542862.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.4	3.8e-06	66	122	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++e+F + +s++e +e+++ g+t +qV+ +F ++++ ++ XP_010542862.1 66 KRPRDLLNPKAIKYMQEVFSIKDAISKKESREISALFGITVSQVREFFVSQKTRVRR 122 799*********************************************999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.62	63	123	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.18E-5	65	125	IPR009057	Homeodomain-like
SMART	SM00389	4.5E-4	65	127	IPR001356	Homeobox domain
CDD	cd00086	0.00246	66	123	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-4	66	132	IPR009057	Homeodomain-like
SuperFamily	SSF47676	9.68E-5	244	335	IPR017923	Transcription factor IIS, N-terminal
Gene3D	G3DSA:1.20.930.10	8.6E-4	246	332	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 941 aa Download sequence Send to blast
MDAFKEEIEI GSSAESLMGL LNSQRELFHS QVDQLQDFVV TQCKLTGVNP LAKEMAAGAL 60 SIKIGKRPRD LLNPKAIKYM QEVFSIKDAI SKKESREISA LFGITVSQVR EFFVSQKTRV 120 RRQARLSREK AIRSSTHTEQ QDGVPENSNA ILPIDPVPLN SASTSALAIS LDPVPLNSVG 180 PTNNGGDSLA IMSPNDIPSG ISDSDKHFVE NIFPLMCKEE TFSGQVKLME WILQIQNNSV 240 LIWFLLRGGV MILTTWLSQA ATEEQTSVLL LILKVLCHLP LHKASPENMS AILQSVNGLR 300 FYRISDISNR ARVLLSRWTK LFAKIQAMEK QNRTNSNINV QSQMLLKQSI EEIMGDGSNI 360 EEFMNPSNRS SETIRRLESS QTPKLLLPSA DDSAKKHMLG PSSSYNRERR KVQLVEQPGQ 420 KAAGRSPQPL RTSTTNQSRP MSADDIQKAK MRALYMQGKH GKKDSSPGAN GETKAATPER 480 PLSLQSAKDS PSHQNNEAET GGTIEPSVVQ PVNPSAVNLF QRADDYKKPS LVSQNISNKP 540 EAVADLKLRM NPQAILKNCK RIQIAWHVPP EIKLDDLWRV AAGGSSKEVD VQRNRNRREK 600 ETIYQSLQQI PLNPKEPWDR EMDHDDSLTP EIPSQQPPEE NITEPQDALD ERRIAAVSAT 660 TSSAQSGTLE PDLELLAVLL KNPELVFALT SGKSGNFPGQ DMVKLLDMIK SAGPSSAGSS 720 SMESSNKLEE KVEVSLPSPT PSTNPGMSGW RPGMIQNPFS KQNPGGSAVS RSVSQAPGAS 780 MQWQAEQSNQ RYVSSAYNTS SPSPQTTSII SEKHHQLQHR STVSTTMERQ QIPPLQQQNF 840 HLNPQLQQNI SGNPSIGYPS KEPMGTASDS WRAQANRSIY YSHEPNNGAS FHGGGHAQAP 900 SYTVNRNTSN PGYESWSPEH SPTGRNHPNG YWDQNNRRWR H

Sequence ? help Back to Top

Protein Sequence Length: 941 aa Download sequence Send to blast

MDAFKEEIEI GSSAESLMGL LNSQRELFHS QVDQLQDFVV TQCKLTGVNP LAKEMAAGAL  60
SIKIGKRPRD LLNPKAIKYM QEVFSIKDAI SKKESREISA LFGITVSQVR EFFVSQKTRV  120
RRQARLSREK AIRSSTHTEQ QDGVPENSNA ILPIDPVPLN SASTSALAIS LDPVPLNSVG  180
PTNNGGDSLA IMSPNDIPSG ISDSDKHFVE NIFPLMCKEE TFSGQVKLME WILQIQNNSV  240
LIWFLLRGGV MILTTWLSQA ATEEQTSVLL LILKVLCHLP LHKASPENMS AILQSVNGLR  300
FYRISDISNR ARVLLSRWTK LFAKIQAMEK QNRTNSNINV QSQMLLKQSI EEIMGDGSNI  360
EEFMNPSNRS SETIRRLESS QTPKLLLPSA DDSAKKHMLG PSSSYNRERR KVQLVEQPGQ  420
KAAGRSPQPL RTSTTNQSRP MSADDIQKAK MRALYMQGKH GKKDSSPGAN GETKAATPER  480
PLSLQSAKDS PSHQNNEAET GGTIEPSVVQ PVNPSAVNLF QRADDYKKPS LVSQNISNKP  540
EAVADLKLRM NPQAILKNCK RIQIAWHVPP EIKLDDLWRV AAGGSSKEVD VQRNRNRREK  600
ETIYQSLQQI PLNPKEPWDR EMDHDDSLTP EIPSQQPPEE NITEPQDALD ERRIAAVSAT  660
TSSAQSGTLE PDLELLAVLL KNPELVFALT SGKSGNFPGQ DMVKLLDMIK SAGPSSAGSS  720
SMESSNKLEE KVEVSLPSPT PSTNPGMSGW RPGMIQNPFS KQNPGGSAVS RSVSQAPGAS  780
MQWQAEQSNQ RYVSSAYNTS SPSPQTTSII SEKHHQLQHR STVSTTMERQ QIPPLQQQNF  840
HLNPQLQQNI SGNPSIGYPS KEPMGTASDS WRAQANRSIY YSHEPNNGAS FHGGGHAQAP  900
SYTVNRNTSN PGYESWSPEH SPTGRNHPNG YWDQNNRRWR H

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010542862.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010542862.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	V4KJ89	0.0	V4KJ89_EUTSA; Uncharacterized protein
STRING	XP_010542862.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]