PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541548.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CO-like
Protein Properties Length: 334aa    MW: 36346.5 Da    PI: 5.035
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.6e-07434434
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                    + C+ +++  + l+C+ +  ++C +C ++ H
  XP_010541548.1  4 KLCDSCKSATAALYCRPDAAFMCLNCDSKVH 34
                    68**************************999 PP
2zf-B_box25.62.6e-084691342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     + C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  XP_010541548.1 46 VWLCEVCEQAPAYVTCKADAATLCVTCDRDIHSAnplarrHDRVPV 91
                    679*****************************66899999999986 PP
3CCT69.11.2e-23270314145
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++e
  XP_010541548.1 270 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRSE 314
                     9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.281148IPR000315B-box-type zinc finger
SMARTSM003369.4E-14148IPR000315B-box-type zinc finger
PfamPF006433.7E-5443IPR000315B-box-type zinc finger
CDDcd000211.22E-8548No hitNo description
PROSITE profilePS5011910.484491IPR000315B-box-type zinc finger
PfamPF006433.6E-64691IPR000315B-box-type zinc finger
CDDcd000215.03E-84791No hitNo description
SMARTSM003364.4E-94991IPR000315B-box-type zinc finger
PfamPF062031.4E-17270312IPR010402CCT domain
PROSITE profilePS5101716.658270312IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAAKLCDSCK SATAALYCRP DAAFMCLNCD SKVHAPNKLA SRHARVWLCE VCEQAPAYVT  60
CKADAATLCV TCDRDIHSAN PLARRHDRVP VMPFYDAVSA AGKPTAAAIN FLDDCYFSDG  120
GREEEEEAAS WLLPNPKTAA TAAEEDTGQY LFSDSDPYLD LDYGSVDPKM EAEEQNSSGT  180
DGVVPMESSR VHVPTVNENC YELDFSGGGS KAYAYSYDCI SQSVSSTSLE VGVVPDGGAT  240
ADATNVFGGG NAANSDSGSQ RPVPLSPAER EARVLRYREK RKNRKFEKTI RYASRKAYAE  300
MRPRIKGRFA KRSEVETDAE RCVFYGGFSV VPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541548.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541548.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-162COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A087GD111e-165A0A087GD11_ARAAL; Uncharacterized protein
STRINGXP_010541548.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-159CONSTANS-like 4